BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925800
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-2477... 651 0.0
AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5... 499 9e-141
AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-1153... 460 4e-129
> AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-24775984
REVERSE LENGTH=850
Length=850
Score = 651 bits (352), Expect = 0.0
Identities = 384/399 (96%), Gaps = 3/399 (1%)
Strand=Plus/Plus
Query 95 TGGTTGCATCACCACAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACCCAAC 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGGTTGCATCACCACAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACCCAAC 363
Query 155 AGAAGCTGAGCTACAAGACATGATCAACGAGGTTGATGCTGATGGAAACGGCACCATTGA 214
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 364 AGAAGCTGAGCTACAAGACATGATCAACGAGGTTGACGCTGATGGAAACGGAACCATTGA 423
Query 215 CTTCCCTGAGTTCCTAAACCTTATGGCTAAGAAGATGAAGGACACAGACTCGGAGGAAGA 274
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 424 CTTCCCTGAGTTCTTAAACCTAATGGCTAAAAAGATGAAGGACACAGACTCGGAGGAAGA 483
Query 275 GCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGGTTCATATCCGCTGCAGA 334
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 484 GCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGTTTCATATCCGCTGCAGA 543
Query 335 GCTGCGCCATGTGATGACTAATTTAGGTGAGAAACTGACTGATGAAGAGGTCGAGGAGAT 394
||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 544 GCTTCGCCATGTGATGACGAATCTAGGTGAGAAACTGACTGATGAAGAGGTCGAGGAGAT 603
Query 395 GATCCGTGAAGCTGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTTGTCAAGAT 454
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GATTCGTGAAGCAGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTTGTCAAGAT 663
Query 455 TATGATGGCTAAGTGATGAT-A-A-GAAGAAAATGAAGA 490
|||||||||||||||||||| | | ||| ||||||||||
Sbjct 664 TATGATGGCTAAGTGATGATGATAAGAAAAAAATGAAGA 702
Score = 165 bits (89), Expect = 4e-40
Identities = 89/89 (100%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 8 agaagaagaagCTATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGC 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGAAGAAGAAGCTATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGC 246
Query 68 TTTTAGCCTCTTCGACAAAGATGGAGATG 96
|||||||||||||||||||||||||||||
Sbjct 247 TTTTAGCCTCTTCGACAAAGATGGAGATG 275
> AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5:15004527-15006205
REVERSE LENGTH=858
Length=858
Score = 499 bits (270), Expect = 9e-141
Identities = 343/379 (91%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 94 ATGGTTGCATCACCACAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACCCAA 153
||||||||||||| ||||| |||||||||||||| ||||| |||||||| || |||||||
Sbjct 240 ATGGTTGCATCACAACAAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 299
Query 154 CAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGATGCTGATGGAAACGGCACCATTG 213
|||| |||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 300 CAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATCG 359
Query 214 ACTTCCCTGAGTTCCTAAACCTTATGGCTAAGAAGATGAAGGACACAGACTCGGAGGAAG 273
||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 360 ACTTCCCCGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCCGAGGAAG 419
Query 274 AGCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGGTTCATATCCGCTGCAG 333
|||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 420 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 479
Query 334 AGCTGCGCCATGTGATGACTAAT-TTAGGTGAGAAACTGACTGATGAAGAGGTCGAGGAG 392
|||| |||||||||||||| ||| || |||||||| || ||||||||||| || || |||
Sbjct 480 AGCTACGCCATGTGATGACCAATCTT-GGTGAGAAGCTAACTGATGAAGAAGTGGAAGAG 538
Query 393 ATGATCCGTGAAGCTGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTTGTCAAG 452
||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 539 ATGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCAAG 598
Query 453 ATTATGATGGCTAAGTGAT 471
|||||||||||||||||||
Sbjct 599 ATTATGATGGCTAAGTGAT 617
Score = 119 bits (64), Expect = 3e-26
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 12 gaagaagCTATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGCTTTT 71
|||||||||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct 80 GAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGAATTCAAGGAAGCTTTT 139
Query 72 AGCCTCTTCGACAAAGATGGAGATG-GTT 99
|||||||||||||||||||| |||| |||
Sbjct 140 AGCCTCTTCGACAAAGATGGCGATGTGTT 168
> AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-11534333
FORWARD LENGTH=768
Length=768
Score = 460 bits (249), Expect = 4e-129
Identities = 384/450 (85%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGCTTTTAGCCTCTTC 80
||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 66 ATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGCCTTTTC 125
Query 81 GACAAAGATGGAGATGGTTGCATCACCAC-AAAGGAGCTGGGAACAGTGATGCGGTCACT 139
|||||||| ||||||||||||||||| || ||| ||||| |||||||||||| | ||| |
Sbjct 126 GACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAGTGATGAGATCATT 184
Query 140 AGGGCAGAACCCAACAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGATGCTGATGG 199
||| || || ||||||||||| ||| ||||||| ||||| ||||| || |||||||||||
Sbjct 185 AGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGATGCTGATGG 244
Query 200 AAACGGCACCATTGACTTCCCTGAGTTCCTAAACCTTATGGCTAAGAAGATGAAGGACAC 259
||||| ||||| |||||||||||||| || ||||| ||||||| |||||||||||||||
Sbjct 245 TAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTAGGAAGATGAAGGACAC 304
Query 260 AGACTCGGAGGAAGAGCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGGTT 319
||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 305 TGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGAACGGTTT 364
Query 320 CATATCCGCTGCAGAGCTGCGCCATGTGATGACTAAT-TTAGGTGAGAAACTGACTGATG 378
||| || || || ||| | | ||||| ||||| ||| || |||||||| | |||||||
Sbjct 365 CATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTT-GGTGAGAAGTTAACTGATG 423
Query 379 AAGAGGTCGAGGAGATGATCCGTGAAGCTGATGTTGATGGAGATGGTCAGATAAACTACG 438
|||| || || ||||||||| ||||||||||||||||||||||||||||| || || |
Sbjct 424 AAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATCAATTATG 483
Query 439 AGGAGTTTGTCAA-GATTATGATGGCTAAG 467
| ||||||||||| | |||||||||| |||
Sbjct 484 AAGAGTTTGTCAAAG-TTATGATGGCAAAG 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5