BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925953
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00280.1 | Symbols: PSBC | photosystem II reaction center pr... 1356 0.0
ATCG00270.1 | Symbols: PSBD | photosystem II reaction center pr... 132 1e-29
> ATCG00280.1 | Symbols: PSBC | photosystem II reaction center
protein C | chrC:33720-35141 FORWARD LENGTH=1422
Length=1422
Score = 1356 bits (734), Expect = 0.0
Identities = 754/764 (99%), Gaps = 0/764 (0%)
Strand=Plus/Plus
Query 21 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACT 60
Query 81 TTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCC 120
Query 141 CGACTTATTAATTTATCTAGTAAACTATTGGGAGCTCATGTAGCCCATGCCGGATTAATC 200
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CGACTTATCAATTTATCTGGTAAACTTTTGGGAGCTCATGTAGCCCATGCCGGATTAATC 180
Query 201 GTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCCCATTTTGTACCCGAAAAGCCC 260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCCCATTTTGTACCTGAAAAGCCC 240
Query 261 ATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCCACTTTAGGATGGGGGGTAGGT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCCACTTTAGGATGGGGGGTAGGT 300
Query 321 CCTGGGGGAGAAGTTATAGACACCTTTCCGTACTTTGTATCTAGAGTACTTCACTTAATT 380
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CCTGGGGGAGAAGTTATAGACACCTTTCCGTACTTTGTATCTGGAGTACTTCACTTAATT 360
Query 381 TCTTCTGCAGTTTTGGGCTTTGGCGGTATTTATCATGCACTTCTTGGACCCAAAACTCTT 440
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 361 TCTTCTGCAGTTTTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAAACTCTT 420
Query 441 GAAGAATCTTTTCCCTTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACCACCATT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAATCTTTTCCCTTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACCACCATT 480
Query 501 TTGGGTATTCACTTAATTTTGTTAGGTGTAGGTGCCTTTCTTCTAGTATTCAAGGCTCTC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGGTATTCACTTAATTTTGTTAGGTGTAGGTGCCTTTCTTCTAGTATTCAAGGCTCTC 540
Query 561 TATTTTGGGGGCGTATATGATACATGGGCTCCGGGAgggggggATGTAAGAAAAATTACA 620
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TATTTTGGGGGCGTATATGATACCTGGGCTCCGGGAGGGGGGGATGTAAGAAAAATTACA 600
Query 621 AACTTGACTCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCCTTTGGGGGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACTTGACTCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCCTTTGGGGGA 660
Query 681 GAAGGATGGATTGTTAGTGTGGACGATTTGGAACATATAATTGGAGGGCATGTATGGTTA 740
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 661 GAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGACATGTATGGTTA 720
Query 741 GGTTCCATTTGTATATTTGGTGGAATCTGGCATATCTTAACCAA 784
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTTCCATTTGTATATTTGGTGGAATCTGGCATATCTTAACCAA 764
Score = 496 bits (268), Expect = 3e-139
Identities = 280/286 (98%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 971 GTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAAAATATATGACTCATGC 1030
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1137 GTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACTCATGC 1196
Query 1031 TCCTTTAGGTTCCTTAAATTCTGTGGGGGGCGTAGCTACTGAGATCAATGCAGTCAATTA 1090
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1197 TCCTTTAGGTTCGTTAAATTCTGTAGGGGGCGTAGCTACTGAGATCAATGCAGTCAATTA 1256
Query 1091 TGTCTCCCCGAGAAGTTGGTTATCTACCTCTCAtttttttCTAGGACTTTTCCTATTCGT 1150
|||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1257 TGTCTCTCCGAGAAGTTGGTTATCTACCTCTCATTTTGTTCTAGGATTTTTCCTATTCGT 1316
Query 1151 GGGTCATTTATGGCACGCGGGAAGGGCTCGGGCAGCGGCAGCGGGATTTGAAAAAGGAAT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGGTCATTTATGGCACGCGGGAAGGGCTCGGGCAGCGGCAGCGGGATTTGAAAAAGGAAT 1376
Query 1211 TGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAA 1256
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAA 1422
Score = 324 bits (175), Expect = 2e-87
Identities = 188/194 (97%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 776 CTTAACC-AATGAGTTTTACGGACCTACGGGGCCAGAAGCTTCTCAAGCTCAAGCATTTA 834
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CTTACCCTAGTGAGTTTTACGGACCTACGGGGCCAGAAGCTTCTCAAGCTCAAGCATTTA 946
Query 835 CTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTGGGGTCTGCTCAAGGACCTACAT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTGGGGTCTGCTCAAGGACCTACAG 1006
Query 895 GTTTAGGTAAATACTTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGAGGCGAAACAA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 GTTTAGGTAAATACTTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGAGGAGAAACAA 1066
Query 955 TGCGCTTTTGGGAT 968
|||| |||||||||
Sbjct 1067 TGCGTTTTTGGGAT 1080
> ATCG00270.1 | Symbols: PSBD | photosystem II reaction center
protein D | chrC:32711-33772 FORWARD LENGTH=1062
Length=1062
Score = 132 bits (71), Expect = 1e-29
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 3 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAA 1051
Query 63 ACGCTCTTTAA 73
|||||||||||
Sbjct 1052 ACGCTCTTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5