BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925982
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67340.1 | Symbols: | HCP-like superfamily protein with MYN... 1788 0.0
> AT1G67340.1 | Symbols: | HCP-like superfamily protein with MYND-type
zinc finger | chr1:25230265-25231840 FORWARD LENGTH=1416
Length=1416
Score = 1788 bits (968), Expect = 0.0
Identities = 1117/1186 (94%), Gaps = 21/1186 (2%)
Strand=Plus/Plus
Query 3 CTCAAAGAC--A-AACAAGATTATGTTACCCTCAAGAAAAACTAAGAGAGTTC-TCTCCG 58
||||||||| | || |||||||||||||||||||||||||||||||||| || |||||
Sbjct 37 CTCAAAGACAAAGAAGAAGATTATGTTACCCTCAAGAAAAACTAAGAGAG-TCTTCTCCT 95
Query 59 GTGACTTTACTCCGGGAAGAAAACGCCGACGA--TG-TGTTGTTCCTTCTTCTGTTTCTC 115
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 96 GTGACTTTACTCCGGGAAGAAAACGCCGACGATGTGTTGTTGTTCCTTCCTCTGTTTCTC 155
Query 116 CGGCGCCGGAACACACAACCGGAGCCGATTTGCTAGATTCAATTCCCGACGATCTTGTTG 175
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 156 CGGTACCGGAAAACACAACCGGAGCCGATTTGCTAGATTCAATTCCAGACGATCTTGTTA 215
Query 176 TCTCTATACTTTGTAAACTTGGTTCTACTTCTCGATGTCCTGCTGATTTCATCAACGTTT 235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 216 TCTCTATACTTTGTAAACTTGGCTCTACTTCTCGATGTCCTGCTGATTTCATCAACGTTT 275
Query 236 TGATGACATGTAAGAGATTAAAAGGATTAGCTATGGATCCTCTTGTCTTGTCGAGATTAT 295
|| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 276 TGCTGACATGTAAGAGATTAAAAGGATTAGCTATGAATCCTATTGTGTTGTCGAGATTAT 335
Query 296 CTTCTAAAGCTATCGCTGTTAAAGCTCATAATTGGTCGGAATATTCTCACCGGTTCTTAA 355
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 336 CTCCTAAAGCTATCGCTGTTAAAGCTCATAATTGGTCGGAATATTCTCACCGGTTTTTAA 395
Query 356 AACGGTGTGTCGACGCCGGAAGTCTTGAAGCTTGTTACACTCTAGGAATGATTCGGTTTT 415
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 396 AAAGGTGTGTCGACGCCGGAAGTCTCGAAGCTTGTTACACTCTAGGAATGATTCGGTTTT 455
Query 416 ATTGTTTACAAAACAGAGGAAACGGCGCGTCGTTGATGGCTAAAGCCGCGATTAGTTCTC 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 456 ATTGTTTACAAAACAGAGGAAACGGCGCGTCGTTAATGGCTAAAGCCGCGATTAGTTCTC 515
Query 476 ACGCGCCGGCGTTGTATT-CTCTAGCGGTGATTCAGTTTAACGGAAGCGGTGGTTCAAAG 534
||||||||||||| |||| || |||| ||||||||||| |||||||||||||||||||||
Sbjct 516 ACGCGCCGGCGTTATATTCCT-TAGCAGTGATTCAGTTCAACGGAAGCGGTGGTTCAAAG 574
Query 535 AACGATAAAGATCTTCGAGCCGGTGTTGCTTTATGTGCGCGTGCGGCTTTTCTTGGTCAC 594
|| |||||||||||| |||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 575 AATGATAAAGATCTTAGAGCCGGTGTGGCTTTATGCGCGCGTGCCGCTTTTCTTGGACAC 634
Query 595 GTAGACGCGCTTCGTGAGCTTGGTCACTGTCTTCAAGATGGTTATGGAGTTCCTCAAAAC 654
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 635 GTCGACGCGCTACGTGAGCTAGGTCACTGTCTTCAAGATGGTTATGGAGTTCCTCAAAAC 694
Query 655 GTCTCTGAAGGTCGGAGGTTTCTT-GTTCAAGCCAACGCTCGTGAACTCGCCGCCGTTTT 713
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 695 GTCTCTGAAGGTAGGAGGTTT-TTAGTTCAAGCCAACGCTCGTGAACTCGCCGCCGTTTT 753
Query 714 ATCTTCCGGTATCCAAGCTAGTTCAACGTGGCTTTCTTTATCACAG---CCACCTCC-G- 768
|||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |
Sbjct 754 ATCTTCCGGTATACAAGCTAGGTCAACGTGGCTTTCTTTATCACAGCCACCACCTCCGGT 813
Query 769 -GTTCCTAACCATGGT---CAGTCTTGTCCTTTACTTAGCGATTTTGGATGTAATGTACC 824
||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct 814 TGTTCCTAACCATGGTCAACAAACTTGTCCTTTGCTTAGTGATTTTGGATGTAATGTACC 873
Query 825 GGCACCGGAAACACATCCGGCGAATAGGTTTTTAGCGGATTGGTTTGCCGTACGCGGCGG 884
|||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 874 GGCACCGGAAACACATCCCGCGAATAGGTTTTTAGCGGATTGGTTCGCTGTTCGCGGCGG 933
Query 885 AGATTGTCCCGGAGATGGGTTGAGATTATGTTCACACGCTGGATGTGGACGACCGGAGAC 944
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 934 AGATTGTCCCGGAGATGGGTTGAGATTGTGTTCACACGCTGGTTGTGGACGACCGGAGAC 993
Query 945 GAGGAAGCATGAGTTTAGGAGATGTTCGGTTTGTGGTGTTGTGAATTATTGTTCACGCGC 1004
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 994 GAGGAAGCATGAGTTTAGGAGATGTTCGGTTTGTGGCGTTGTTAATTATTGTTCACGCGC 1053
Query 1005 TTGTCAAGCTTTAGATTGGAAACTCCGGCATAAAATGGATTGTGCTCCGGTGGAACGATG 1064
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1054 TTGTCAAGCTTTAGATTGGAAACTCCGGCATAAAATGGATTGTGCTCCGGTGCAACGGTG 1113
Query 1065 GCTAGAGGAAGGTGACGGTGGAGAAGGTAACGTTCAGATTGACGGAAATGGTAACGGTGA 1124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GCTAGAGGAAGGTGACGGTGGTGAAGGTAACGTTCAGATTGACGGAAATGGTAACGGTGA 1173
Query 1125 TAATGTTTTGCTTCCAATGAGTTAACGGCAATGTAACGGCTGCTTT 1170
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TAATGTTTTGCTTCCAATGAGTTAACGGCAATGTAACGGCTGCTTT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5