BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925985 Length=1834 Score E Sequences producing significant alignments: (Bits) Value AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family ... 2926 0.0 AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein ... 375 6e-103 > AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239117-25243837 REVERSE LENGTH=2145 Length=2145 Score = 2926 bits (1584), Expect = 0.0 Identities = 1740/1816 (96%), Gaps = 8/1816 (0%) Strand=Plus/Plus Query 20 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATTACTGAGCAGGACTCGCTTCTTCTGAC 79 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 127 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATCACTGAGCAGGACTCGCTTCTTCTGAC 186 Query 80 TAGGAATTTGCTTCGTATTGCTATATTCAACATCAGCTATATCAGAGGACTCTTTCCTGA 139 ||| |||||||||||||||||||| |||||||| || || |||||||||||||||||||| Sbjct 187 TAGAAATTTGCTTCGTATTGCTATCTTCAACATAAGTTACATCAGAGGACTCTTTCCTGA 246 Query 140 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 306 Query 200 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 366 Query 260 TCAGAGGAAATATTTAAAGACGCTCATGTTCTGCATATGTGAAACAGTAGATGGTCCGAT 319 ||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||| Sbjct 367 TCAGAGGAAATATTTGAAGACGCTCATGTTCAGCATATGTGAAACTGTTGATGGTCCGAT 426 Query 320 GATTGAGGAATACGCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 379 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GATTGAGGAATACTCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 486 Query 380 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAACATTTAACTCCACTGCTGACAT 439 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 487 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAATATTTAACTCCACTGCTGACAT 546 Query 440 TACTCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAACTGAT 499 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 547 TACCCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAGCTGAT 606 Query 500 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTTTGTACTACGA 559 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 607 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTCTGTACTACGA 666 Query 560 TGATGTGACGCCACCAGATTATGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 619 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 667 TGATGTGACGCCACCAGATTACGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 726 Query 620 TCAGTATGTATGGACAAAGAATCCTCTGAGGATGGAAATTGGGAATGTTAACAGCAAACA 679 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 727 TCAGTATGTATGGACAAAGAATCCTCTGAGAATGGAAATTGGGAATGTTAACAGCAAACA 786 Query 680 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAGGATGAAAATGACGA 739 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 787 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAAGATGAAAATGACGA 846 Query 740 CATGCAAGATGATGGGAAGAGTATTGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 799 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 847 CATGCAAGATGATGGTAAGAGTATAGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 906 Query 800 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 966 Query 860 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGTTGAGAA 919 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 967 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGCTGAGAA 1026 Query 920 TGAACAGCAGTTAGCAAGGGTAAAGGACTGGATCAACTCCCATCACCTCGATACCCTGGA 979 ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||| Sbjct 1027 TGAACAGCAGTTAGCAAGGGTGAAGGACTGGATCAACTCCCGTCACCTTGATACTCTGGA 1086 Query 980 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1039 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1146 Query 1040 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGCAAGGACACGTACATTAAAAA 1099 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1147 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGGAAGGACATGTACATTAAAAA 1206 Query 1100 GAGAGACAAGACACCAGAGAGCGAGTTCACTTTTGTGAAAGATGAAGCTGATGTTCAAAC 1159 |||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||| Sbjct 1207 GAGAGACAAGACACCAGAGAGCGAATTCACCTTTGTGAAAGAGGAAGCCGATGGTCAAAT 1266 Query 1160 TGT-TCCAAAGGATGGGAAACCTGTAGCTCCTGAAGACTACTTGTACATGAAAGCTCTAT 1218 | | |||| || | ||| |||| |||||||||||||||||||||||||||||||| | Sbjct 1267 T-TCTCCA--GG--G--AAATCTGTTGCTCCTGAAGACTACTTGTACATGAAAGCTCTTT 1319 Query 1219 ACCATTCTCTTCCGATGAAATATGTGACGATTACAAAGCTTCACAACATGCTGGATGGTG 1278 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1320 ACCATTCTCTTCCGATGAAATATGTGACAATTACAAAGCTTCACAACATGCTGGATGGTG 1379 Query 1279 AGGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1338 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AAGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1439 Query 1339 AAGCTTCGAGCAACCGCAGGCTAGGAAAGCGTGTGATTCATTCTAGTCTAACTGAGAGGA 1398 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 1440 AAGCTTCGAGCAACCGCAGGCTAGGGAAGCGTGTGATTCATTCTAGTCTAACTGAGAAGA 1499 Query 1399 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACAGATGATATGGATGTGGATGTTAACGAAG 1458 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 1500 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACCGATGATATGGATGTGGATGTTACCGAAA 1559 Query 1459 CTGCTAACAAGACCAACGGCCTAGAGGGCAAAGTAACCGCAGACGTATCTACCTGTGGAG 1518 || ||||||||| ||||||| ||| | ||||||||||||||| |||||||||||||||| Sbjct 1560 CTATTAACAAGACAAACGGCCCAGATGCCAAAGTAACCGCAGATGTATCTACCTGTGGAG 1619 Query 1519 GCATCCACTCCATAGGATCAGACTTCACACGTACGAAAGGAAGATCTGGTGGGATGCAGC 1578 | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1620 GTATCCACTCCATAGGTTCAGACTTCACACGCACGAAAGGAAGATCTGGTGGGATGCAGC 1679 Query 1579 AGAACGGCTCTGTTCTAAGTGAACAGACCATCTCTAAAGCTGGGAACACTCCCATTAGCA 1638 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1680 AGAACGGCTCTGTTCTAAGTGAACAGACTATCTCTAAAGCTGGGAACACTCCCATTAGCA 1739 Query 1639 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTAAATGGAGGGGCTGCTAAGG 1698 ||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||| Sbjct 1740 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTACATGGTGGAGCTGTTAAGG 1799 Query 1699 AGGTCGAGACGGTCAATTGTAGCCAAGCCTCACAGGACAGACGTTGCAGGAAAACCAGCA 1758 | | |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1800 AAGCCGAGACAGTCAACTGTAGCCAAGCCTCACAGGACAGACGTGGCAGGAAAACCAGCA 1859 Query 1759 TGGTGAGAGAGCCAATTCTGCAGTACTCTAAGCGTCAGAAATCTCAGGCTAATTGAAGAT 1818 ||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1860 TGGTGAGGGAGCCTATTCTGCAGTACTCCAAGCGTCAGAAATCTCAAGCTAATTGAAGAC 1919 Query 1819 ACCACCTCTATCAGAC 1834 |||||||||||||||| Sbjct 1920 ACCACCTCTATCAGAC 1935 > AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein | chr4:15548840-15555094 FORWARD LENGTH=4332 Length=4332 Score = 375 bits (203), Expect = 6e-103 Identities = 333/395 (84%), Gaps = 12/395 (3%) Strand=Plus/Plus Query 57 GAGCAGGACTCGCTTC-TTCTGACTA-GGAATTTGCTTCGTATTGCTATATTCAACATCA 114 |||||| | |||| || || |||||| |||| ||||| |||| ||| || ||||| |||| Sbjct 25 GAGCAGCAATCGC-TCATTTTGACTACGGAA-TTGCTCCGTACTGCCATCTTCAATATCA 82 Query 115 GCTATATCAGAGGACTCTTTCCTGAGAAGTATTTCAACGATAAATCGGTTCCTGCTTTAG 174 | || |||||||| |||||||| | | ||||||||| |||| |||||||||||||||| Sbjct 83 GTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAGGATATGTCGGTTCCTGCTTTAG 142 Query 175 ATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAATTGATTGGA 234 || ||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||| Sbjct 143 ATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATTGGCTGGA 202 Query 235 TGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATA-TTTAAAGACGCTCATGTTCTGC 293 |||||||||| ||||||||||| || || | |||| | | ||| | ||| || |||| | Sbjct 203 TGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAA-AAGCTGATATTCTAC 261 Query 294 ATATGTGAAACAGTAGATGGTCCGATGATTGAGGAATACGCATTTTCTTTCAGCTATTCA 353 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 262 ATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACATATTTTCTTTCAGCTATTCA 321 Query 354 GATTCTGACAGCCAAGATGTCATGATGAATATCAATCGTACTGGAAAT-AAGAAAAATGG 412 ||||||||||| ||||||||| ||||||||||||| |||||||| | || | |||| Sbjct 322 GATTCTGACAGTCAAGATGTCCGGATGAATATCAATATTACTGGAA-TCAATACCTATGG 380 Query 413 AGGAACAT-TTAACTCCACTGCTGACATTACTCCA 446 ||||| | |||||||||||||||||| |||||| Sbjct 381 GGGAAC-TCTTAACTCCACTGCTGACA--ACTCCA 412 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90762585360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5