BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925994 Length=1333 Score E Sequences producing significant alignments: (Bits) Value AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MC... 2076 0.0 AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5)... 728 0.0 > AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MCM2/3/5) family protein | chr1:25263804-25265719 REVERSE LENGTH=1571 Length=1571 Score = 2076 bits (1124), Expect = 0.0 Identities = 1267/1337 (95%), Gaps = 5/1337 (0%) Strand=Plus/Plus Query 1 AACCCCAACCTAGTAAGAATATGCTCAGAGCGAAGCATATCGGTAAAAATTACTCTTCCT 60 |||||||||| || || |||||||||||||||||||| ||||||||||||||||| |||| Sbjct 149 AACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAAAAATTACTCCTCCT 208 Query 61 CCTTGTCACCGGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATCG 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 209 CCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTG 268 Query 121 GTACTGTTGCCACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAGTT 180 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 269 GTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATT 328 Query 181 CTGTGAAGAGTG--G-TGATGATGATTCGTCTAAGACTGGTGTTGAGTTGCTTTGTGTAG 237 |||||| ||||| | |||| ||||||| || |||||||||||||| ||||||||||| | Sbjct 329 CTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGCTTTGTGTGG 388 Query 238 TGAGAGCTGTGTTGAAGAAGATACGAAGGAGAGTTTTGGTTGGAGATAAGGTTCTTGTTG 297 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 389 TGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTG 448 Query 298 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGCCGCTCGG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 449 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGACGTTCGG 508 Query 358 AGATTTTGGATCCACCGGTTGCGAACGTTGATCATTTGCTGGTTCTTTTCTCTTTGGATC 417 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 509 AGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATC 568 Query 418 AACCGAAACTGGAGCTGTTCACTCTCACTAGGTTCTTGGTGGAAGCTGAATCTACTCGAA 477 |||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 569 AACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTA 628 Query 478 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGCGAAGAGGAATTGGAATCTT 537 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 629 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGGAATTGGAAACTT 688 Query 538 GGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 597 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 GGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 748 Query 598 ACGGACTTGATGCCATTGCGTTTGTTCTGCG-GAATCAGACTTCTGTGATTGTTGGACCT 656 | |||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 749 ATGGACTTGATGATATTGCGTTTGTTCTGAGAGA-TCAGACTTCTGTGATTGTTGGACCT 807 Query 657 AGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGAGTAACCATGGTGGTGGTGTG 716 |||||||| ||||||||||| ||||||||| | ||||||||||| ||||||||||||||| Sbjct 808 AGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTG 867 Query 717 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 868 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 927 Query 777 GTAGGGGAAGTGTCTAGTAGAAGTGGTCGAGGTAAACATACAACACGAAATGTATCGCTA 836 ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 928 GTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTA 987 Query 837 CTGCCGATTTCTGAAGGTGGTTACCTCGCTGATACACCTGGCTTTAACCAGCCTAGTTTG 896 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 988 CTGCCGGTTTCTGAAGGTGGTTACCTCGCTGATACTCCTGGCTTTAACCAGCCTAGTTTG 1047 Query 897 CTGAAAGTAACAAAGCAATCACTTGCACACTGCTTTCCTGAGATACGGAACATGATTGAG 956 ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1048 CTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGATACGGAACATGATTGAG 1107 Query 957 GGCGAAAAATGTGGATTCAGAGATTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1016 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1108 AGCGAAAAATGTGGATTCAGAGACTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1167 Query 1017 GGTGATTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1076 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 GGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1227 Query 1077 GAGTTTCAGCTTAGGACTTTTGGAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGA 1136 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1228 GAATTTCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGGTACAAGGTGGGA 1287 Query 1137 GACATGGGTGTGAAACATGCTGAACCGCGGCTAATGCCTAAGAAGCATAGGAGAGAGTCA 1196 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1288 GACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCATAGGAGAGAGTCA 1347 Query 1197 AGGAAGAAAACTAAACAGACAATGATCAGTGAGCTTGATGAGTTCGAAGATGAAGACAGT 1256 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1348 AGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGT 1407 Query 1257 GACTTGGACATAGAGAACGACCCAATCATCCGAGCCATTGAGAATGAGAATAAATGACAA 1316 || ||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct 1408 GATTTGTACATAGAGAACGACCCAATCGTCCAAGCCATTGAGAATGAGAATAAAAGACAA 1467 Query 1317 TGAGAGAAATCATGTTT 1333 |||||||| ||| |||| Sbjct 1468 TGAGAGAACTCAAGTTT 1484 > AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5) family protein | chr1:25269626-25271861 REVERSE LENGTH=1620 Length=1620 Score = 728 bits (394), Expect = 0.0 Identities = 893/1126 (79%), Gaps = 65/1126 (6%) Strand=Plus/Plus Query 110 TCAAGCTATCGGTACTGTTGCCACAGCTCAAGC-GAACTTTATGCGCGTCATTGTTCAAG 168 |||||| |||||||| | ||||| |||| ||| | ||| ||||||||||||||||||| Sbjct 475 TCAAGCCATCGGTACAATCGCCACCGCTCTAGCTG-ACTACATGCGCGTCATTGTTCAAG 533 Query 169 ATGTAGCTAGTTCTGTGAAGAGTGGTGATGATGATTCGTCTAAGACTGGTGTTGAGTTGC 228 ||||| || | ||| | | | | || || || | | ||||| ||| |||||||||| Sbjct 534 ATGTACCT-G-AGAGTG-ATAAT-G-GA-GAGGA-T-G-ATAAGATTGGCGTTGAGTTGC 584 Query 229 TTTGTGTAGTGAG--AGCTGTGTTGAAGAAGATACGAAGGAGAGTT-TTGGTTGGAGATA 285 ||||||| ||||| || | | ||||||||||| | |||| ||| || ||||| |||| Sbjct 585 TTTGTGTGGTGAGAAAG-T-TACTGAAGAAGATAGGTAGGACTGTTCTT-GTTGGTGATA 641 Query 286 AGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATGTGT 342 | ||||| ||| ||| | |||||||||||||| | |||| || |||| | ||||||| Sbjct 642 AAGTTCTCGTT-GATAAAGTTGATTGGGTTGATCGGAGAGCTAA-GATT-ATCAATGTGT 698 Query 343 TTCATCGCCG-CTCGGAGATTTTGGATCCACCGGTTGCGAACGTTGATCA-TTTGCTGGT 400 || |||| | ||||||| |||||||||||||||||||||| |||||||| || | || | Sbjct 699 TTGATCG-AGTCTCGGAGGTTTTGGATCCACCGGTTGCGAATGTTGATCACTTAG-TGAT 756 Query 401 TC--TTTTCTCTTTGGATCAACCGAA-ACTGGAGCTGTTCACTCTCACTAGGTTCTTGGT 457 || ||||||| || |||||||| || | | || | || || || |||||||||||||| Sbjct 757 TCTGTTTTCTC-TT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTGGT 813 Query 458 GGAAGCTGAATCTACTCGAATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAG 517 |||||||||||||| | |||||| | | ||| |||||||||| ||| ||||||| | | Sbjct 814 GGAAGCTGAATCTATTGGAATTCGAATCACAGTTGCTTTGAACAAATGTGAACTCGTCA- 872 Query 518 C-GAAGAGGAATTGGAATCTTGGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGT 576 | |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 873 CTCAAGAGGAAGTGGAATCTTGGAAGATAAGATTGCGTAGTTGGAACTATGAACCATTGT 932 Query 577 TTTGTAGTGTGGGAACTAAAGACGGACTTGATGCCATTGCGTTTGTTCTGCGGAATCAGA 636 | ||||||||||||||||||| |||| |||||| ||||||||| ||||| ||||||| Sbjct 933 TCTGTAGTGTGGGAACTAAAGTCGGAATTGATGAGATTGCGTTTAACCTGCGAAATCAGA 992 Query 637 CTTCTGTGATTGTTGGACCTAGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGA 696 ||||||| |||||||||||||||||||| |||||||| ||||||||||| || ||||| | Sbjct 993 CTTCTGTCATTGTTGGACCTAGTGGTGTTGGAAAGTCCAGCTTAATCAATATATTGAGAA 1052 Query 697 GTAACCATGGTGGTGGTGTGGTGGAAGATGA-GAATTGGTTTGAGCCT---ATGTTA-G- 750 ||| | | ||||||| | | || | || ||| || ||| ||||| | | | Sbjct 1053 GTAGCTACGGTGGTGACAT--TA-AACACGAAGAAGTG-TTTAAGCCTGCCAAAACAAGA 1108 Query 751 -G--TAATAA---GTGGTTTGATGATCAGCGAGTAGGGGAAGTGTCT-AGTAGAAGTGGT 803 | ||| || ||||||||| |||||| | ||||||||||| || | ||||| ||| Sbjct 1109 AGAATAAAAAAAAGTGGTTTGAAGATCAGAGTGTAGGGGAAGTTTCACA-TAGAAATGGA 1167 Query 804 CGAGGTAAACATACAACACGAAATGTATCGCTACTGCCGATTTCTGAAGGTGGTTACCTC 863 |||||||||||||||| ||||||||| ||||||| || ||| || |||||| ||||| Sbjct 1168 AGAGGTAAACATACAACCCGAAATGTAACGCTACTTCCTCTTTGTGGAGGTGGATACCTT 1227 Query 864 GCTGATACACCTGGCTTTAACCAGCCTA-GTTTGCTGAAAGTAACAAAGCAATCACTTGC 922 |||||||| |||||||||||| ||| || ||| ||||||||||||||||||| |||| | Sbjct 1228 GCTGATACTCCTGGCTTTAACAAGCATAAGTT-GCTGAAAGTAACAAAGCAAAAACTTCC 1286 Query 923 ACAC-TGCTTTCCTGAGATACGGAACATGATTGAGGGCGAAAAATGTGGATTCAGAG-AT 980 | || ||||||||||||||||| ||| | ||||| | ||||||| || || || || Sbjct 1287 -CTTGTGTTTTCCTGAGATACGGAAAATGGTCGAGGGAGGAAAATGTAAATACA-AGGAT 1344 Query 981 TGCTTGCATATT-GGGGAACCAGGATGTGTTGTGAAAGGTGATTGGGAAAGGTATCCTTA 1039 |||| |||| || |||| || ||| |||| ||||| ||||| ||||||||||||| ||| Sbjct 1345 TGCTCGCAT-TTAGGGGTACAAGGCTGTGCTGTGACAGGTGGTTGGGAAAGGTATGATTA 1403 Query 1040 CTACTTACAATTGCTTGATGAGATCAGAATC-AGGGAAGAGTTTCAGCTTAGGACTTTTG 1098 || |||||| ||||||||||||||| |||| | | | |||| ||| |||| || | || Sbjct 1404 CTTTTTACAACTGCTTGATGAGATCAAAATCGATG-AGGAGTGTCAACTTAAGAAGTATG 1462 Query 1099 GAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGAGACATGGGTGTGAAACATGCTG 1158 ||||||||| ||||| || |||||| | | | ||||||| | ||||||| |||| ||| Sbjct 1463 GAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAACAAGCTA 1522 Query 1159 AACCGCGGCTA-ATGCCTAAGAAGCATAGGAGAGAGTCAAGGAAGA 1203 |||| ||| || || || |||||| |||||||||| || ||||||| Sbjct 1523 AACCACGGATAGATCCC-AAGAAGTATAGGAGAGAATCGAGGAAGA 1567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65612112315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5