BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926057
Length=247
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 230 6e-60
> AT1G67860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G67865.1);
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25444805-25445263
REVERSE LENGTH=459
Length=459
Score = 230 bits (124), Expect = 6e-60
Identities = 152/165 (92%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 18 AAAATGTTTGACAAGCTTATTGGAGGGATTGTCGGAGGGATTGCCGGAGCGATTATCGGA 77
|||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 85 AAAATGCTTGATACGCTTATTGGAGGGATTGTCGGAGGGATTGCCGGAGCGATTATTGGA 144
Query 78 ACGGTGGATGGGTTCGCCAGAGGGGTCGGAATATGCCCCGAAACTTACCAGAGCTGCAAC 137
|||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
Sbjct 145 ACGGTGGATGGGTTCGCCAGAGGGATCGGAATATGCCCCGATAGTTACCAGAGCTGCA-C 203
Query 138 -CGTCAC-GACTGCGAGGAGCACAAAAAGAAGCCCCCGGCCAACC 180
||| || ||||||||||||||||||||||||| |||| ||||||
Sbjct 204 TCGT-ACCGACTGCGAGGAGCACAAAAAGAAGCTCCCGACCAACC 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11209708027
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5