BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926133
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68520.1 | Symbols: | B-box type zinc finger protein with C... 1893 0.0
> AT1G68520.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:25709114-25710907 REVERSE LENGTH=1596
Length=1596
Score = 1893 bits (1025), Expect = 0.0
Identities = 1294/1418 (91%), Gaps = 41/1418 (3%)
Strand=Plus/Plus
Query 1 CTCTCTTTTTATAACCACTTCTCGGAAACTGAAACCTTTGTAGAGAGAACTCATAGTTCG 60
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 13 CTCTCTTTTTATAACCACTTCTCGAAAACTGAAACCTTTGTAGAGAGAACCCATAGTTCG 72
Query 61 ATAAAACATTCTTTTTGCAACTGAGACTTGGCAACTTGGTTTTACTCAAAGTAAGGTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 73 ATAAAACATTCTTTTTGCAACTGAGACTTGGCAACTTGGTTTTACTCAAAGTAAGATTTC 132
Query 121 TTCTCGTTGATGGTGATAAGTAT-AATATGATGAAAAGTTTGGCTAGTGCGGTCGGAGGG 179
|||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 133 TTCTTGTTGATGGTGATAAGT-TCAATATGATGAAAAGTTTGGCTAGTGCGGTTGGAGGG 191
Query 180 AAGACGGCGAGGGCATGTGATAGCTGCGTGAAGAGGCGGGCACGCTGGTATTGCTCAGCT 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 192 AAGACGGCGAGGGCATGTGATAGCTGCGTGAAGAGGCGGGCACGTTGGTATTGCGCAGCT 251
Query 240 GATGATGCCTTCCTTTGTCATGCTTGTGACGGTTCGGTCCACTCGGCGAACCCTCTTGCT 299
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 252 GATGATGCCTTTCTTTGCCATGCTTGTGACGGTTCGGTCCACTCGGCAAACCCTCTTGCT 311
Query 300 CGTAGGCACGAGAGGGTTCGCTTGAAGTCGGCTAGCTCCGGGAAGCATCGCCACGCTTCC 359
|||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||
Sbjct 312 CGTAGGCACGAGAGAGTTCGCTTGAAATCGGCTAGCGCCGGAAAGTATCGCCA------- 364
Query 360 TCCTCCTCACCGTCTCACCAATCTACGTGGCATCAGGGATTTACACGTAAAGCTCGGACC 419
| |||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 365 T--GCCTCGCCGCCTCACCAAGCCACGTGGCATCAGGGATTTACACGTAAAGCTCGGACC 422
Query 420 CCACGTGGAGGCAAGAAGAGCCACACGATGGTTTTTCATGATCTTGTGCCGGAGATGAGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CCACGTGGAGGCAAGAAGAGCCACACGATGGTTTTTCATGATCTTGTGCCGGAGATGAGC 482
Query 480 ACAGAAAATCAGGCGGAGAGCTACGAGGTGGAAGTGGAAGAGCAGCTCATCTTCGAGGTG 539
|| || |||| |||||||| ||||| | ||||||||||||||||| || ||||||
Sbjct 483 ACGGAGGATCAAGCGGAGAGTTACGA----G--GTGGAAGAGCAGCTCATATTTGAGGTG 536
Query 540 CCGGTGCTGAACCCGATGGTTGAGGAGCACTGCTTTCACCAATCCGTGGAGACAA-AG-G 597
|||||| ||||| |||||||||||||||| |||||| |||||||| |||||| || ||
Sbjct 537 CCGGTGATGAACTCGATGGTTGAGGAGCAATGCTTTAACCAATCCCTGGAGA-AACAGAA 595
Query 598 TCGAGTTTCCGATGATGCCCTTAAGTTTCAA-ATGCAGCGACGAAGAAGATGAAGACAAC 656
| |||||||| |||||||||||||||||||| | | || |||||||||||||| ||||||
Sbjct 596 T-GAGTTTCCAATGATGCCCTTAAGTTTCAAGA-GTAGTGACGAAGAAGATGACGACAAC 653
Query 657 GCTGAGAGTTGTCTGAATGGTTTGTTCCCAACCGACATGGAACTGGCTCAATTCACAGCT 716
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 654 GCTGAGAGTTGTCTGAATGGTTTGTTCCCAACCGACATGGAACTAGCTCAGTTCACAGCT 713
Query 717 GACGTGGAGACTCTACTTGGTGGAGGGATGGAGCGAGAGTTTCATTCCATAGAAGAGCTA 776
||||||||||||||||| |||||| || ||| ||||||||||||||||||||||| |||
Sbjct 714 GACGTGGAGACTCTACTCGGTGGA-GG--GGATCGAGAGTTTCATTCCATAGAAGAACTA 770
Query 777 GGGTTAGGTGAGGTGTTAAAGATCGAAAAAGAGGAGGTGGAGGAAGAGGAAGTAGTTGTG 836
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 771 GGGTTAGGTGAGATGTTAAAGATCGAAAAAGAGGAGGTGGAGGAAGAGG--G-AGTTGTG 827
Query 837 ACAAGAGAAGTGTATGATCTAGATGAAGCTGAAGAGACTTCTCCATTTGAAATAAGCTTT 896
|||||||||||| |||||| |||||||| ||| ||||| || ||||||||||||||||||
Sbjct 828 ACAAGAGAAGTGCATGATCAAGATGAAGGTGATGAGACATCCCCATTTGAAATAAGCTTT 887
Query 897 GACTACGAGTTCGCACACAAGACGACATAT-gaagaagaagaagaagataagaaagaaga 955
|||||||||| | |||||||||| |||| | || |||| |||||||||| ||||||||||
Sbjct 888 GACTACGAGTACACACACAAGACCACAT-TCGATGAAGGAGAAGAAGATGAGAAAGAAGA 946
Query 956 tgtgatgaagaatag-aatggatg-tggtagtgaatgagatgaGTGGTAGGATTAAGGAA 1013
|||||||||||| | ||||| | ||| ||||||||||||||||||| ||||||| |||
Sbjct 947 CGTGATGAAGAAT-GTGATGGA-GATGGGAGTGAATGAGATGAGTGGTGGGATTAAAGAA 1004
Query 1014 GAGAAGAAGGAGAAGGCTCTTATGCTTAGATTGGACTACGAATCTGTGATTTCCACTTGG 1073
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1005 GAGAAGAAGGAGAAGGCTCTTATGCTTAGATTGGACTATGAATCAGTCATTTCCACTTGG 1064
Query 1074 AAAGGCCAAGGGATCCCATGGACCGACCGAGAGCCATCTGAAATTGACCTCGACATGGTT 1133
||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||
Sbjct 1065 GGAGGCCAAGGGATCCCATGGACCGCCCGGGTGCCATCTGAAATAGACCTCGACATGGTT 1124
Query 1134 TGTTGCCCAACCCATTCCTTGGGTGAAAGT-G-G-AGAGGCTCATCATCACAATCACTTC 1190
|||| |||||||||| || ||||||||||| | | |||||||||||||||||| ||||||
Sbjct 1125 TGTTTCCCAACCCATACCATGGGTGAAAGTGGAGCAGAGGCTCATCATCACAACCACTTC 1184
Query 1191 CGCGGCCTAGGGTTACACATGGGAGAGGCTGGTGATGGAGGAAGAGAGGCTAGGGTTTCA 1250
|||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1185 CGCGGCCTAGGGTTACACCTAGGAGATGCTGGGGATGGAGGAAGAGAGGCTAGGGTTTCA 1244
Query 1251 AGATACCGAGAGAAAAGGAGGACAAGGTTGTTCTCCAAGAAGATAAGGTACGAGGTGCGT 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1245 AGATACCGAGAGAAAAGGAGGACAAGGTTGTTCTCCAAGAAGATAAGGTACGAGGTACGT 1304
Query 1311 AAATTGAATGCAGAGAAAAGGCCCCGCATGAAAGGAAGGTTCGTGAAGAGATCTTCAATA 1370
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1305 AAATTGAATGCAGAGAAAAGGCCTCGCATGAAAGGAAGGTTCGTCAAGAGATCTTCAATT 1364
Query 1371 GGTGTTGCTCACTAAAGAA---AACTAGTTATGGATAT 1405
||||||||||||||||||| || || ||||||||||
Sbjct 1365 GGTGTTGCTCACTAAAGAACTTAATTAATTATGGATAT 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5