BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926219
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:2... 1596 0.0
AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3... 80.5 3e-14
> AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26039048-26040720
FORWARD LENGTH=1454
Length=1454
Score = 1596 bits (864), Expect = 0.0
Identities = 1019/1090 (93%), Gaps = 26/1090 (2%)
Strand=Plus/Plus
Query 8 TTCTTTGTTGTTAATGGCGGAAGCAAACCAGAGAAGTAGAGAAATGGCGAGAAGTAATAG 67
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 254 TTCTTTTTTGTTAATGGCGGAAGCAAACGAGAGAAGTAAAGAAATGGCGAGAAGTAATAG 313
Query 68 TTGTGTGTTTCCAAGAGATCTACTTCAGAGATTTATCTCTAATTCTGTtgaaggtgaaga 127
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 314 TTGTGTGTTTCCAAGAGATCTGCTTCAGAGATTTATCTCTAACTCTGTTGAAGGTGAAGA 373
Query 128 tgatgatgaagaagaagaagatgatgagatCGAGTTAAATCTTGGCTTATCTCTTGGTGG 187
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGATGATGAAGAAGAAGATGATGATGAGATCGAGTTAAATCTTGGCTTATCTCTTGGTGG 433
Query 188 GAGATTTGGAGTTGATAAGAGTAATAATAATAAGCTTGTGAGATCTTCTTCCGTTGTTGT 247
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 434 AAGATTTGGTGTTGATAAGAG------TAATAAGCTTGTGAGATCTTCTTCCGTTGTTGT 487
Query 248 CACCATGCCTCTGTTTCGGGAAGATCATCATCTTCATCAGGCGGCGGCGATGATAACGAC 307
|| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 488 AACGATGCCTCTGTTTCGTGAAGATCATCATCATCATCAAGCGGCGGCGATGATAACAAC 547
Query 308 GAAGGTTTCGACGGAGACGGTGGCGGGAGCGACTCGGGGTACGGGTTTGATGAGAACGAC 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TAAGGTTTCGACGGAGACGGTGGCGGGAGCGACTCGGGGTACGGGTTTGATGAGAACGAC 607
Query 368 GTCGTTGCCGGCGGAGACGGAGGAAGAGTGGAGGAAGAGGAAAGAGATGCAGACTTTGAG 427
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GTCGTTGCCGGCAGAGTCGGAGGAAGAGTGGAGGAAGAGGAAAGAGATGCAGACTTTGAG 667
Query 428 AAGAATGGCGGCGAAGAGACGGAGAAGCGAGAAGCTTCGTACCGTCGCCGTCGCCGGTGG 487
||||||||| || ||||||||||||||||||||||||||||| | || |||| |||
Sbjct 668 AAGAATGGCAGCCAAGAGACGGAGAAGCGAGAAGCTTCGTACTG--GC-GTCGGCGG--- 721
Query 488 AGGAAACAGTAATAATCCGGAAGAAGCTG-TCACTGCCACCACTTCGAGACGGCGAGGTA 546
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 722 AGGAAACAGTAATAATCCGGAAGAAGCTGCT-ACTGCCACCGCTTCGAGACGGCGAGGTA 780
Query 547 GACCATCGTCAGGGCTTCCTCGGTGGTCAGCGACGGCTAACAAAAGCGGGCTTTTGCGGC 606
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 781 GACCATCGTCAGGACTTCCACGGTGGTCAGCGACTGCTAACAAAAGCGGGCTTTTGCGGC 840
Query 607 AACACAGTGCTGCTCTTGATTCACTACAAGTTTCCGTTGAATCTCAAGGCGGAGGAGGAG 666
| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 841 AGCACAGTGCTGGTCTCGATTCACTACAAGTTTCCGGTGAATCTCTAGGCGGAGGA--AG 898
Query 667 GTGGAGGAGCCGCCGGAAGTTCATCGAGCGTCTCCGAGTTGGAAACTAAAGCGTCGAGCG 726
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 899 ----AG---CCGCCGGAAGTTCTTCGAGCGTCTCCGAGTTGGAAACTAAAGCGTCCAGTG 951
Query 727 ATGAAGCAAGAAGCTTACCATCAACGACACA---ACAACAGGAAACAACGACAAAGCCAA 783
| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 952 ACGAAGCAAGAAGCTTACCATCAACTACACAGCCACAACAAGAAACAACGACAAAGCCAA 1011
Query 784 CAAATCGGCTGCGAAGATTGAGTTCAGTGGACATGAACATGAAGATGGAGCCACAAGGGA 843
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAAATCGTTTGAGAAGATTGAGTTCAGTGGACATGAACATGAAGATGGAGCCACAAGGGA 1071
Query 844 AAGGAAAAAGTGAGATGCCATGTGTGTTTACCAAAGGAGATGGACCAAATGGGAAGAGAG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AAGGAAAAAGTGAGATGCCATGTGTGTTTACCAAAGGAGATGGACCAAATGGGAAGAGAG 1131
Query 904 TTGATGGGATTCTTTATAGATACAGTAATGGAGAAGAAGTTAGGATCATGTGTGTTTGCC 963
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1132 TTGATGGGATTCTTTATAGATACGGCAGTGGAGAAGAAGTTAGGATCATGTGTGTTTGCC 1191
Query 964 ATGGCGATTTCTTGTCTCCGGCCGATTTCGTTATACATGCCGGTGGTCCTCATGTAGATC 1023
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1192 ATGGCGATTTCTTGTCTCCGGCGGATTTCGTTAAACATGCCGGTGGTCCTCATGTAGATC 1251
Query 1024 ATCCTCTTAGACACATTGTTGTCAACACTTCTTCTCCTTCTAATCTCTTATAATAGACCA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATCCTCTTAGACACATTGTTGTCAACACTTCTTCTCCTTCTAATCTCTTATAATAGACCA 1311
Query 1084 AAACCCCTCT 1093
||| ||||||
Sbjct 1312 AAAACCCTCT 1321
> AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3:11382214-11384004
REVERSE LENGTH=1245
Length=1245
Score = 80.5 bits (43), Expect = 3e-14
Identities = 78/95 (82%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 369 TCGTTGCCGGCGGAGACGGAGGAAGAGTGGAGGAAGAGGAAAGAGATGCAGACTTTGAGA 428
||||| || | |||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 525 TCGTTACCCGTGGAGACGGAGGAAGAGTGGAGGAAGAGGAAGGAGTTGCAGAGTTTGAGG 584
Query 429 AGAATGGCGGCGAAGAGACGGAGAAGC-GAGAAGC 462
|| | | ||| |||||| |||| | |||||||
Sbjct 585 AGGCTTGAGGCTAAGAGAAAGAGAT-CAGAGAAGC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5