BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926293 Length=1743 Score E Sequences producing significant alignments: (Bits) Value AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transpo... 1495 0.0 AT1G27040.1 | Symbols: | Major facilitator superfamily protein... 538 7e-152 > AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296676-26300472 REVERSE LENGTH=2092 Length=2092 Score = 1495 bits (809), Expect = 0.0 Identities = 902/947 (95%), Gaps = 6/947 (1%) Strand=Plus/Plus Query 6 agagagagagagagagaATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 65 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 AGAAAGAAAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 108 Query 66 ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG 125 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 109 ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG 168 Query 126 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 169 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC 228 Query 186 TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT 245 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 229 TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT 288 Query 246 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 348 Query 306 CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA 365 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 349 CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA 408 Query 366 CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG 425 ||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| | Sbjct 409 CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG 468 Query 426 AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG 485 | |||||||||||||||||||||||| | |||||||| ||||||||||| || ||||||| Sbjct 469 AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG 528 Query 486 TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC 545 |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 529 TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC 588 Query 546 CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 605 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 589 CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 648 Query 606 GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG 665 ||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 649 GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG 708 Query 666 GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 725 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 768 Query 726 GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC 785 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 769 GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC 828 Query 786 TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG 845 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 829 TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT 888 Query 846 CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC 905 ||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||| Sbjct 889 CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC 942 Query 906 AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG 952 ||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 943 AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG 989 Score = 1208 bits (654), Expect = 0.0 Identities = 748/794 (94%), Gaps = 3/794 (0%) Strand=Plus/Plus Query 952 GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT 1009 ||||||||||||||||||||||||||||| | ||| |||||| ||||| ||||||||||| Sbjct 1051 GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT 1109 Query 1010 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1169 Query 1070 GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC 1129 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1170 GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC 1229 Query 1130 TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT 1189 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1230 TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT 1289 Query 1190 ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC 1249 || |||||||||||||| || ||||| || ||||| ||||| |||||| ||||||||||| Sbjct 1290 ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC 1349 Query 1250 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA 1309 ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 1350 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA 1409 Query 1310 CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT 1369 || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1410 CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT 1469 Query 1370 TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429 |||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 1470 TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT 1529 Query 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG 1489 |||||| |||||||||||||||||||||||||| |||| ||||||||||| || |||||| Sbjct 1530 GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG 1589 Query 1490 CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA 1549 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1590 CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA 1649 Query 1550 AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC 1609 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1650 AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT 1709 Query 1610 TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1669 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1710 TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1769 Query 1670 TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG 1729 || ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1770 TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG 1829 Query 1730 GTGGTCAACTTTTG 1743 ||| ||||||||| Sbjct 1830 ATGGGCAACTTTTG 1843 > AT1G27040.1 | Symbols: | Major facilitator superfamily protein | chr1:9386784-9390042 REVERSE LENGTH=1837 Length=1837 Score = 538 bits (291), Expect = 7e-152 Identities = 618/772 (80%), Gaps = 38/772 (5%) Strand=Plus/Plus Query 960 GAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTTCCGATATT 1017 |||||||| ||||||||||| | |||||||||| |||| || ||||||||||| ||||| Sbjct 967 GAATGCACGGTCCAACAAGT-AGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAATATT 1025 Query 1018 TGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATT-CTCCGTCCAAC 1076 || |||||| || ||||| || || |||||||||||||| ||||| || ||| ||||| | Sbjct 1026 TGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTAC-TTACTCTGTCCACC 1084 Query 1077 AAGCTGCTTCTATGAACACAAAGATAG-GAAGCCT-AAAGATTCCTCCAGCTTCCTTACC 1134 ||||||| | ||||||| |||||| | || | | || | ||||| ||||||| ||||| Sbjct 1085 AAGCTGCAACGATGAACAGAAAGATCGTTAA-CTTCAATG-TTCCTTCAGCTTCTTTACC 1142 Query 1135 CATCTTCCCCGTCGTTTTCAT-CATGATCCTCGCACCTATCTACGACCATCTCATTATTC 1193 | || || || |||||||| | |||| || || || | ||| |||||||| ||||| | Sbjct 1143 GGTTTTTCCGGTTGTTTTCATGC-TGATTCTTGCTCCAACCTATGACCATCTGATTATCC 1201 Query 1194 CATTCGCTAGAAAGGCAACCAAAACAGAAA-CGGGAGTAACTCATTTACAAAGAATCGGA 1252 ||||||| ||||| | ||||||| | |||| || | | |||||||| ||||||||||| Sbjct 1202 CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTA-TCACTCATTTGCAAAGAATCGGT 1260 Query 1253 GTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA-CG 1311 ||||| ||||| ||||||||| |||||||||| || || ||| | || | | | ||| || Sbjct 1261 GTAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCG-AGTTAAAGCG 1319 Query 1312 GAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTC-GAAAGAAACCTTACCCGTCACTT 1370 |||| |||||| | ||| | || ||||||||||| | ||||||| ||||| |||||| Sbjct 1320 GAAGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTG-AAGAAACTTTACCAATCACTT 1378 Query 1371 TCCTATGGATCGCGCTTCAATATCT-TTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429 | || ||||| || ||||| ||||| ||| ||||||||||||||||| |||||||||||| Sbjct 1379 TTCTGTGGATTGCTCTTCAGTATCTGTTT-CTAGGATCAGCTGATCTGTTCACACTAGCT 1437 Query 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATC-TCTAGCGACATC 1488 ||| | |||||| ||||||||| ||||||||| | ||||||||||| | | || ||||| Sbjct 1438 GGATTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCAT-TGGCTACATC 1496 Query 1489 GCTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCC-ATAG 1547 |||||| |||||||| |||||| | |||||||| |||||||| ||||| || || |||| Sbjct 1497 GCTCTCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGT-GCCGATAG 1555 Query 1548 TAAACAGCA-TCAC-AGGAAGCT-CAGG-CAACA-CACCTTGGCTCAGAGGAAAAAGCAT 1602 | ||||| | | || | | || | | || ||| | | || ||||| || |||||| | | Sbjct 1556 TGAACAG-AGTAACTAAG-AG-TGCTGGACAA-AGC-CCATGGCTTGGA-GAAAAA-C-T 1607 Query 1603 AAACCGCT-ACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACT 1661 ||||| | ||| ||| |||| || |||||||| |||||||| || |||| | ||||| Sbjct 1608 TAACCG-TAACAGACTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACT 1666 Query 1662 TCTTGCACTATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTC 1713 |||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1667 TCTTGCACTATCTCTTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTC 1718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86194335765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5