BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926293

Length=1743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transpo...  1495    0.0   
  AT1G27040.1 | Symbols:  | Major facilitator superfamily protein...   538    7e-152


> AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 
1:2 | chr1:26296676-26300472 REVERSE LENGTH=2092
Length=2092

 Score = 1495 bits (809),  Expect = 0.0
 Identities = 902/947 (95%), Gaps = 6/947 (1%)
 Strand=Plus/Plus

Query  6    agagagagagagagagaATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG  65
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49   AGAAAGAAAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG  108

Query  66   ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG  125
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  109  ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG  168

Query  126  TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  169  TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC  228

Query  186  TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT  245
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  229  TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT  288

Query  246  TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  289  TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT  348

Query  306  CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA  365
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  349  CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA  408

Query  366  CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG  425
            ||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |
Sbjct  409  CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG  468

Query  426  AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG  485
            | |||||||||||||||||||||||| | |||||||| ||||||||||| || |||||||
Sbjct  469  AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG  528

Query  486  TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC  545
            |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  529  TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC  588

Query  546  CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG  605
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  589  CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG  648

Query  606  GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG  665
            ||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  649  GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG  708

Query  666  GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA  725
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  709  GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA  768

Query  726  GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC  785
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  769  GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC  828

Query  786  TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG  845
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  829  TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT  888

Query  846  CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC  905
            ||||||||||||| |||||||| ||| |||||||||||||||||||||      ||||||
Sbjct  889  CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC  942

Query  906  AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG  952
            ||||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct  943  AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG  989


 Score = 1208 bits (654),  Expect = 0.0
 Identities = 748/794 (94%), Gaps = 3/794 (0%)
 Strand=Plus/Plus

Query  952   GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT  1009
             ||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||||||
Sbjct  1051  GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT  1109

Query  1010  CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC  1069
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1110  CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC  1169

Query  1070  GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC  1129
             ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1170  GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC  1229

Query  1130  TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT  1189
             ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1230  TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT  1289

Query  1190  ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC  1249
             || |||||||||||||| || ||||| || ||||| ||||| |||||| |||||||||||
Sbjct  1290  ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC  1349

Query  1250  GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA  1309
             ||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct  1350  GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA  1409

Query  1310  CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT  1369
             || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  1410  CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT  1469

Query  1370  TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT  1429
             |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct  1470  TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT  1529

Query  1430  GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG  1489
             |||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct  1530  GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG  1589

Query  1490  CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA  1549
             |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  1590  CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA  1649

Query  1550  AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC  1609
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  1650  AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT  1709

Query  1610  TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC  1669
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1710  TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC  1769

Query  1670  TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG  1729
             || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1770  TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG  1829

Query  1730  GTGGTCAACTTTTG  1743
              ||| |||||||||
Sbjct  1830  ATGGGCAACTTTTG  1843


> AT1G27040.1 | Symbols:  | Major facilitator superfamily protein 
| chr1:9386784-9390042 REVERSE LENGTH=1837
Length=1837

 Score =  538 bits (291),  Expect = 7e-152
 Identities = 618/772 (80%), Gaps = 38/772 (5%)
 Strand=Plus/Plus

Query  960   GAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTTCCGATATT  1017
             |||||||| |||||||||||  | |||||||||| |||| || ||||||||||| |||||
Sbjct  967   GAATGCACGGTCCAACAAGT-AGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAATATT  1025

Query  1018  TGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATT-CTCCGTCCAAC  1076
             || |||||| || ||||| || || |||||||||||||| ||||| || ||| ||||| |
Sbjct  1026  TGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTAC-TTACTCTGTCCACC  1084

Query  1077  AAGCTGCTTCTATGAACACAAAGATAG-GAAGCCT-AAAGATTCCTCCAGCTTCCTTACC  1134
             |||||||  | ||||||| |||||| |  || | | || | ||||| ||||||| |||||
Sbjct  1085  AAGCTGCAACGATGAACAGAAAGATCGTTAA-CTTCAATG-TTCCTTCAGCTTCTTTACC  1142

Query  1135  CATCTTCCCCGTCGTTTTCAT-CATGATCCTCGCACCTATCTACGACCATCTCATTATTC  1193
               | || || || |||||||| | |||| || || || | ||| |||||||| ||||| |
Sbjct  1143  GGTTTTTCCGGTTGTTTTCATGC-TGATTCTTGCTCCAACCTATGACCATCTGATTATCC  1201

Query  1194  CATTCGCTAGAAAGGCAACCAAAACAGAAA-CGGGAGTAACTCATTTACAAAGAATCGGA  1252
             ||||||| ||||| | ||||||| | ||||  || | | |||||||| ||||||||||| 
Sbjct  1202  CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTA-TCACTCATTTGCAAAGAATCGGT  1260

Query  1253  GTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA-CG  1311
             ||||| ||||| ||||||||| |||||||||| || || ||| | || | | | ||| ||
Sbjct  1261  GTAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCG-AGTTAAAGCG  1319

Query  1312  GAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTC-GAAAGAAACCTTACCCGTCACTT  1370
             ||||  |||||| | |||  | || ||||||||||| | ||||||| |||||  ||||||
Sbjct  1320  GAAGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTG-AAGAAACTTTACCAATCACTT  1378

Query  1371  TCCTATGGATCGCGCTTCAATATCT-TTTCCTAGGATCAGCTGATCTATTCACACTAGCT  1429
             | || ||||| || ||||| ||||| ||| ||||||||||||||||| ||||||||||||
Sbjct  1379  TTCTGTGGATTGCTCTTCAGTATCTGTTT-CTAGGATCAGCTGATCTGTTCACACTAGCT  1437

Query  1430  GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATC-TCTAGCGACATC  1488
             ||| |  |||||| ||||||||| ||||||||| | ||||||||||| | | || |||||
Sbjct  1438  GGATTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCAT-TGGCTACATC  1496

Query  1489  GCTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCC-ATAG  1547
             |||||| |||||||| |||||| | |||||||| |||||||| ||||| ||  || ||||
Sbjct  1497  GCTCTCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGT-GCCGATAG  1555

Query  1548  TAAACAGCA-TCAC-AGGAAGCT-CAGG-CAACA-CACCTTGGCTCAGAGGAAAAAGCAT  1602
             | ||||| | | || | | || | | || ||| | | || |||||  || |||||| | |
Sbjct  1556  TGAACAG-AGTAACTAAG-AG-TGCTGGACAA-AGC-CCATGGCTTGGA-GAAAAA-C-T  1607

Query  1603  AAACCGCT-ACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACT  1661
              ||||| | ||| ||| ||||  || |||||||| |||||||| || ||||  | |||||
Sbjct  1608  TAACCG-TAACAGACTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACT  1666

Query  1662  TCTTGCACTATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTC  1713
             |||||||||||||||||||||||| ||||||||||||||  ||||| |||||
Sbjct  1667  TCTTGCACTATCTCTTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTC  1718



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 86194335765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5