BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926394
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70640.1 | Symbols: | octicosapeptide/Phox/Bem1p (PB1) doma... 610 5e-174
> AT1G70640.1 | Symbols: | octicosapeptide/Phox/Bem1p (PB1) domain-containing
protein | chr1:26636255-26637127 FORWARD LENGTH=765
Length=765
Score = 610 bits (330), Expect = 5e-174
Identities = 464/527 (88%), Gaps = 15/527 (3%)
Strand=Plus/Plus
Query 30 AATCCAACCACCGTCAAATTCCTCTGTAGCTACGACGGTAGAATCACCCCACGTTATCCC 89
||| |||| |||||||| ||||| |||||||||| || |||||||||||||||||||||
Sbjct 10 AATACAACAACCGTCAAGTTCCTTTGTAGCTACGGTGGCAGAATCACCCCACGTTATCCC 69
Query 90 GACGGCAAACTCCGTTACCAAGGCGGTC-ATACACGTGTCCTCTCCGTCCCTCGCTCCAT 148
|||||||| |||||||| |||||||| | |||||||||||||||||||| ||||| ||||
Sbjct 70 GACGGCAAGCTCCGTTATCAAGGCGG-CGATACACGTGTCCTCTCCGTCACTCGCGCCAT 128
Query 149 ATCCTTCACCGAGCTAACGAAAAAGCTCGGTGAGATTTGCGGGATTGCGGTGAGTAGTCT 208
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 129 ATCCTTCACCGAGCTAAAGAAGAAGCTCGGTGAGATTTGCGGGATTGCGGTGACTAGTCT 188
Query 209 CCGGTGTCAGTTACCAACGGATGATCTCGACGCGCTTGTAACCGTAAGCTCCGACGAGGA 268
||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct 189 CCGATGTCAGTTACCAACAGATGATCTTGACGCGCTTGTAACGGTAAGATCCGACGAGGA 248
Query 269 TCTAAAGAATCTCATGGAGGAGTACGATCTCGCTACAAC-GACGCATGTTAAGATCCACG 327
|||||||||||| |||||||| ||||||||||||| ||| | |||| |||||||| ||||
Sbjct 249 TCTAAAGAATCTTATGGAGGAATACGATCTCGCTATAACAG-CGCAAGTTAAGATTCACG 307
Query 328 TATTCCTTTCTCCGCTAAAATCAATGAGGACAACAACGAACTCGTCGCCTCCAACTTCAA 387
| || ||||||||||| ||||||| ||| |||||| | |||||||| |||||| ||||||
Sbjct 308 TCTTTCTTTCTCCGCTTAAATCAACGAGAACAACAGCAAACTCGTCTCCTCCACCTTCAA 367
Query 388 CGACGTCTTCTTCTTCATCAAAATCGTCGAAATCACGCTCTCGGTCTCCTCCATCGCCGT 447
||||||| |||||||| |||||||| | | ||||||| |||||||||||||| |
Sbjct 368 CGACGTCATCTTCTTCGTCAAAATC----A---C--GCTCTCGTTCTCCTCCATCGCCTT 418
Query 448 CAACTCCGGAAACATGTCAGAGTTGCGTAGGGAGATCGATGCGTAACAATGGATGCTACG 507
|||||||||||||||||| |||||||||| |||||| || |||||||||||||| ||||
Sbjct 419 CAACTCCGGAAACATGTCCTAGTTGCGTAGAGAGATCTATACGTAACAATGGATGTTACG 478
Query 508 TTCATCGAAGTCCAAG-CAATAACCAATTCTACCTCTTCAATAATTG 553
||||| |||||||||| || ||||||||| ||| || |||| |||||
Sbjct 479 TTCATAGAAGTCCAAGTCA-TAACCAATTATACTTCATCAACAATTG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28030654026
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5