BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926404
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70730.3 | Symbols: PGM2 | Phosphoglucomutase/phosphomannomu... 2911 0.0
AT1G23190.1 | Symbols: PGM3 | Phosphoglucomutase/phosphomannomu... 2001 0.0
> AT1G70730.3 | Symbols: PGM2 | Phosphoglucomutase/phosphomannomutase
family protein | chr1:26669020-26673166 REVERSE LENGTH=1989
Length=1989
Score = 2911 bits (1576), Expect = 0.0
Identities = 1710/1776 (96%), Gaps = 4/1776 (0%)
Strand=Plus/Plus
Query 4 TTCGTTCAGATTTGAAAATGGTGTCGTTCAAGGTCTCTGTAGTCTCTACTTCACCTATTG 63
||| |||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 217 TTC-TTCAGATTTG-AAATGGTGTCGTTCAAGGTCTCTCTCGTCTCTACTTCGCCTATTG 274
Query 64 ATGGCCAGAAACCTGGAACTTCTGGACTCCGTAAGAAGGTGAGAGTGTTTAAGCAACCAA 123
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 275 ATGGCCAGAAACCTGGGACTTCTGGACTCCGTAAGAAGGTGAAAGTGTTTAAGCAACCAA 334
Query 124 ATTACCTTGAAAATTTTGTTCAGGCAACGTTCAATGCTCTTACTCCTGAGAAAGTTAAAG 183
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 335 ATTACCTTGAAAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG 394
Query 184 GTGCGACACTTGTGGTCTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTATTCAGATTA 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTATTCAGATTA 454
Query 244 TAGTTAAGATGGCAGCGGCTAATGGTGTTAGACGCGTGTGGGTTGGTCAAAACAGTCTGC 303
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 455 TAGTAAAGATGGCAGCAGCTAATGGTGTTAGACGTGTGTGGGTTGGTCAAAACAGTCTGC 514
Query 304 TATCAACTCCTGCTGTATCAGCTATTATCCGTGAAAGAGTAGGGGCTGATGGATCTAAAG 363
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 515 TATCAACTCCTGCAGTATCAGCTATTATTCGTGAAAGAGTAGGGGCTGATGGATCTAAAG 574
Query 364 CCACCGGAGCATTTATATTAACAGCAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCG 423
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCACAGGAGCATTTATCTTAACAGCAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCG 634
Query 424 GAATTAAGTACAATATGGAAAATGGTGGACCAGCTCCTGAATCAATTACAGATAAGATTT 483
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 635 GAATTAAGTACAATATGGAAAATGGTGGACCAGCTCCTGAATCAATCACTGATAAGATTT 694
Query 484 ACGAGAACACAAAGACAATCAAGGAGTACCCAATAGCGGAAGATCTACCCAGGGTTGATA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACGAGAACACAAAGACAATCAAGGAGTACCCAATAGCGGAAGATCTACCCAGGGTTGATA 754
Query 544 TTTCTACCATAGGTATAACCAGCTTTGAGGGACCTGAAGGAAAGTTTGACGTCGAAGTTT 603
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 755 TTTCTACTATTGGTATAACCAGCTTTGAAGGACCTGAAGGAAAGTTTGACGTCGAAGTTT 814
Query 604 TTGATTCCGCAGATGACTATGTTAAACTAATGAAGTCAATCTTCGACTTTGAATCCATCA 663
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTGATTCTGCAGATGACTATGTTAAACTAATGAAGTCAATCTTCGACTTTGAATCCATCA 874
Query 664 AGAAATTGCTATCGTCTCCAAAATTTACGTTCTGCTATGATGCATTGCATGGAGTGGCTG 723
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 875 AGAAATTGCTATCTTATCCAAAATTTACTTTCTGCTATGATGCATTGCATGGAGTGGCTG 934
Query 724 GAGCCTATGCACACCGCATCTTTGTCGAAGAACTAGGTGCACAAGAAAGTTCGTTGTTGA 783
|||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 935 GAGCATATGCACATCGCATCTTTGTCGAAGAACTAGGTGCACCAGAAAGTTCGTTGTTGA 994
Query 784 ACTGCGTACCCAAGGAGGACTTTGGAGGAGGCCATCCGGATCCCAATCTTACCTATGCTA 843
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 995 ACTGCGTACCCAAGGAGGACTTTGGAGGGGGCCACCCGGATCCCAATCTTACCTATGCTA 1054
Query 844 AGGAGCTTGTGGCACGCATGGGATTGAGTAAAACTGACGATGCCGGAGGCGAGCCTCCAG 903
||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1055 AGGAGCTCGTGGCACGCATGGGATTGAGTAAAACTGATGATGCTGGTGGCGAGCCTCCAG 1114
Query 904 AGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTTGGTAAAAGGTTTT 963
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1115 AGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTCGGTAAAAGGTTTT 1174
Query 964 TCGTAACTCCTTCGGATTCAGTTGCCATAATTGCTGCAAATGCTGTTGGGGCCATACCAT 1023
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1175 TCGTAACTCCTTCGGATTCAGTTGCTATAATTGCTGCAAATGCTGTTGGGGCCATACCAT 1234
Query 1024 ACTTCAGCTCTGGTTTGAAAGGTGTTGCAAGGAGCATGCCCACCTCAGCTGCCCTTGATG 1083
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1235 ACTTCAGCTCTGGTTTAAAAGGTGTTGCTAGGAGCATGCCGACCTCAGCTGCACTTGATG 1294
Query 1084 TCGTTGCAAAAAACTTGGGTTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATT-TTTC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1295 TCGTTGCAAAAAACTTGGGTTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATTCTTT- 1353
Query 1143 GGCAATCTAATGGATGCTGGGATGTGCTCTGTATGCGGAGAAGAAAGCTTTGGAACTGGT 1202
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1354 GGCAATCTAATGGATGCTGGGATGTGCTCTGTATGCGGAGAAGAAAGTTTTGGAACCGGT 1413
Query 1203 TCGGATCATATCCGTGAGAAAGATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTG 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TCGGATCATATCCGTGAGAAAGATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTG 1473
Query 1263 GCTCACAAGAACAAGGAAACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATC 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GCTCACAAGAACAAGGAAACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATT 1533
Query 1323 GTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGAAC 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGAAC 1593
Query 1383 GTAGATGCAACTAAAGCTAAAGAACTCATGGGGCTCTTGGTTAAGTTGCAATCTTCACTT 1442
||||| |||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1594 GTAGACGCAACTGCAGCTAAAGAACTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTT 1653
Query 1443 CCTGAAGTCAACAAGATTATAAAGGGAATTCATCCGGAGGTTGCAAATGTTGCAAGCGCA 1502
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1654 CCCGAAGTCAACAAGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCA 1713
Query 1503 GATGAATTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGATCCGA 1562
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 GATGAGTTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGATCCGA 1773
Query 1563 TACTTATTCGAAGATGGATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGA 1622
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 TACTTATTCGAGGATGGATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGA 1833
Query 1623 GCAACAATAAGGCTCTACATTGAACAGTATGAAAAGGACGCCTCAAAGATTGGCCGAGAT 1682
|||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||
Sbjct 1834 GCAACAATAAGGCTATACATTGAACAATACGAGAAGGACGCCTCAAAGATCGGCCGAGAT 1893
Query 1683 TCTCAGGATGCTCTTGCTCCTTTGGTTGATGTTGCTTTAAAGCTGTCGAAAATGCAAGAG 1742
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1894 TCTCAGGATGCTCTTGGTCCCCTGGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAG 1953
Query 1743 TTCACCGGCCGATCATCACCAACTGTTATTACATAA 1778
||||||||||||||||||||||||||||||||||||
Sbjct 1954 TTCACCGGCCGATCATCACCAACTGTTATTACATAA 1989
> AT1G23190.1 | Symbols: PGM3 | Phosphoglucomutase/phosphomannomutase
family protein | chr1:8219869-8224469 FORWARD LENGTH=2112
Length=2112
Score = 2001 bits (1083), Expect = 0.0
Identities = 1541/1763 (87%), Gaps = 27/1763 (2%)
Strand=Plus/Plus
Query 30 TTCAAGGTCTCTGTAGTCTCTACTTCACCTATTGATGGCCAGAAACCTGGAACTTCTGGA 89
|||||||| ||| || || || || |||||||||||||||||||| |||||||||||
Sbjct 84 TTCAAGGTTTCTACCGTATCCACATCTCCTATTGATGGCCAGAAACCAGGAACTTCTGGT 143
Query 90 CTCCGTAAGAAGGTGAGAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTTCAGGCA 149
|| ||||||||||||| |||||| |||||||| ||||| || || |||||||| || |||
Sbjct 144 CTTCGTAAGAAGGTGAAAGTGTTCAAGCAACCCAATTATCTAGAGAATTTTGTCCAAGCA 203
Query 150 ACGTTCAATGCTCTTACTCCTGAGAAAGTTAAAGGTGCGACACTTGTGGTCTCTGGTGAT 209
|| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 204 ACATTCAATGCTCTTACGGCGGAGAAAGTTAAAGGTGCCACACTTGTGGTCTCTGGTGAT 263
Query 210 GGTCGTTATTATTCAGAGCAAGCTATTCAGATTATAGTTAAGATGGCAGCGGCTAATGGT 269
||||||||||| ||| || | ||| ||||||| ||| ||||||||||||| |||||||||
Sbjct 264 GGTCGTTATTACTCAAAGGATGCTGTTCAGATCATAATTAAGATGGCAGCAGCTAATGGT 323
Query 270 GTTA-GACGCGTGTGGGTTGGTCAAAACAGTCTGCTATCAACTCCTGCTGTATCAGCTAT 328
| || |||| |||||||||||| |||||| |||| ||||||||||||||||||||||| |
Sbjct 324 G-TACGACGTGTGTGGGTTGGTAAAAACACTCTGTTATCAACTCCTGCTGTATCAGCTGT 382
Query 329 TATCCGTGAAAGAGT-AGGGGCTGATGGATCTAAAGCCACCGGAGCATTTATATTAACAG 387
|| ||||||||| | ||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 383 GATTCGTGAAAGA-TCAGGGGCTGATGGATCGAAAGCAACTGGAGCATTTATCTTAACAG 441
Query 388 CAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCGGAATTAAGTACAATATGGAAAATG 447
|||| || |||||||||||||| ||||||||||| ||||| || ||||||||||||||||
Sbjct 442 CAAGCCACAATCCTGGTGGCCCTACTGAGGATTTTGGAATCAAATACAATATGGAAAATG 501
Query 448 GTGGACCAGCTCCTGAATCAATTACAGATAAGATTTACGAGAACACAAAGACAATCAAGG 507
| ||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 502 GAGGACCTGCTCCTGAATCAATCACTGATAAAATTTACGAGAACACTAAGACAATCAAGG 561
Query 508 AGTACCCAATAGCGGAAGATCTACCCAGGGTTGATATTTCTACCATAGGTATAACCAGCT 567
||||||||||||| |||||||||||| |||||||||||| | | ||| ||||||| |
Sbjct 562 AGTACCCAATAGCACAAGATCTACCCAATGTTGATATTTCTGCTGTTGGTGTAACCAGTT 621
Query 568 TTGAGGGACCTGAAGGAAAGTTTGACGTCGAAGTTTTTGATTCCGCAGATGACTATGTTA 627
|||| |||||||||||||| ||||| || |||||||||||| ||||||||||||| ||||
Sbjct 622 TTGAAGGACCTGAAGGAAAATTTGATGTTGAAGTTTTTGATCCCGCAGATGACTACGTTA 681
Query 628 AACTAATGAAGTCAATCTTCGACTTTGAATCCATCAAGAAATTGCTATCGTCTCCAAAAT 687
|| ||||||||||||||||||| |||||| ||||| |||||||||||| |||||||| |
Sbjct 682 AATTAATGAAGTCAATCTTCGATTTTGAAGCCATCCGGAAATTGCTATCATCTCCAAAGT 741
Query 688 TTACGTTCTGCTATGATGCATTGCATGGAGTGGCTGGAGCCTATGCACACCGCATCTTTG 747
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 742 TTACATTCTGCTATGATGCATTGCATGGAGTTGCTGGAGCCTATGCACATCGCATCTTTG 801
Query 748 TCGAAGAACTAGGTGCACAAGAAAGTTCGTTGTTGAACTGC-GTACCCAAGGAGGACTTT 806
|||||||||| ||||| |||||||| | || ||||||||| | |||||||||||||||
Sbjct 802 TCGAAGAACTCGGTGCGCAAGAAAGCGCATTATTGAACTGCACT-CCCAAGGAGGACTTT 860
Query 807 GGAGGAGGCCATCCGGATCCCAATCTT-ACCTATGCTAAGGAGCTTGTGGCACGCATGGG 865
|||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 861 GGAGGAGGGCATCCGGATCCCAAT-TTGACCTATGCTAAGGAGCTTGTGGCACGAATGGG 919
Query 866 ATTGA-GTAAAACTGACGATGCCGGAGGCGAGCCTCCAGAGTTTGGCGCCGCTGCTGATG 924
||| | ||||| | ||| | | ||||| || ||||||||||||||||||||||||||||
Sbjct 920 ATT-AGGTAAATCCGAC-A--CTGGAGGTGAACCTCCAGAGTTTGGCGCCGCTGCTGATG 975
Query 925 GTGATGCAGACCGAAACATGATCCTTGGTAAAAGGTT-TTTCGTAACTCCTTCGGATTCA 983
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 976 GTGATGCAGACCGTAACATGATCCTTGGTAAAAGGTTCTTT-GTAACTCCTTCGGATTCA 1034
Query 984 GTTGCCATAATTGCTGCAAATGCTGTTGGGGCCATACCATACTTCAGCTCTGGTTTGAAA 1043
|||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct 1035 GTTGCCATAATTGCTGCAAATGCTATTGGTGCCATCCCGTACTTCAGCTCTGGTTTGAAA 1094
Query 1044 GGTGTTGCAAGGAGCATGCCCACCTCAGCTGCCCTTGATGTCGTTGCAAAAAACTTGGGT 1103
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
Sbjct 1095 GGTGTTGCAAGGAGCATGCCAACCTCAGCTGCTCTTGATGTCGTTGCAAAAAGCTTGAAT 1154
Query 1104 TTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATTTTTCGGCAATCTAATGGATGCTGGG 1163
|||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1155 TTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAGTTTTTTGGTAATCTGATGGATGCTGGG 1214
Query 1164 ATGTGCTCTGTATGCGGAGAAGAAAGCTTTGGAACTGGTTCGGATCATATCCGTGAGAAA 1223
||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1215 ATGTGTTCTGTTTGTGGAGAAGAAAGTTTTGGAACTGGCTCGGATCATATCCGTGAGAAA 1274
Query 1224 GATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTGGCTCACAAGAACAAGG-AAAC 1282
|| || || |||||||||||||| ||| | || ||||| |||||||||||||||| |||
Sbjct 1275 GACGGAATATGGGCAGTTCTTGCATGGATGTCTATACTTGCTCACAAGAACAAGGGAAAT 1334
Query 1283 CCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATCGTCCGCCAGCACTGGGCTAC 1342
|||| || || || ||||||||| | ||||||||||| ||||||||||| ||||||||
Sbjct 1335 A-TTGACGGTAACGCTAAACTGGTGTCAGTTGAAGACATTGTCCGCCAGCATTGGGCTAC 1393
Query 1343 ATATGGCCGTCACTATTACACTCGATACGACTATGAGAACGTAGATGCAACTAAAGCTAA 1402
|| || ||||||||||||||||| |||||||||||||| ||||| ||| |||||||||
Sbjct 1394 CTACGGTCGTCACTATTACACTCGTTACGACTATGAGAATGTAGACGCAGGTAAAGCTAA 1453
Query 1403 AGAACTCATGGGGC-TCTTGGTTAAGTTGCAATCTTCACTTCCTGAAGTCAACAAGATTA 1461
||||| |||| || | ||||| || |||||||||||| |||||||||| |||||||||
Sbjct 1454 GGAACTGATGGAGCAT-TTGGTCAAATTGCAATCTTCAATTCCTGAAGTTAACAAGATTG 1512
Query 1462 T-AAAGGGAATTCATCCGGAGGTTGCAAATGTTGCAAGCGCAGATGAATTCGAGTACAAA 1520
| ||||| ||||| | |||| || |||| || || || || ||||||||||||||||||
Sbjct 1513 TGAAAGG-AATTCGTTCGGACGTGGCAAGCGTCGCCAGTGCTGATGAATTCGAGTACAAA 1571
Query 1521 GATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGA-TCCGATACTTATTCGAAGATGG 1579
|||||||| ||||| || |||| |||||||| |||| |||| ||||| || ||||| ||
Sbjct 1572 GATCCAGTTGATGGATCCATTTCGAAGCACCA-GGGAATCCGTTACTTGTTTGAAGACGG 1630
Query 1580 ATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGAGCAACAATAAGGCTCTA 1639
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||
Sbjct 1631 ATCACGACTTGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCCGGCTTTA 1690
Query 1640 CATTGAACAGTATGAAAAGGACGCCTCAAAGATTGGCCGAGATTCTCAGGATGCTCTTG- 1698
||| |||||||| |||||||| || ||||| | |||||||| || ||||| ||| |||
Sbjct 1691 CATCGAACAGTACGAAAAGGATGCTTCAAAAACCGGCCGAGAATCCCAGGAAGCT-TTGT 1749
Query 1699 CTCCTTTGGTTGATGTT-GCTTTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA 1757
||||| ||||||| || ||| ||||||||||||| ||| |||||||||| |||||||||
Sbjct 1750 CTCCTCTGGTTGAC-TTAGCTCTAAAGCTGTCGAAGATGGAAGAGTTCACAGGCCGATCA 1808
Query 1758 TCACCAACTGTTATTACATAAGA 1780
| || || || || ||||||||
Sbjct 1809 GCCCCCACCGTCATAACATAAGA 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88955365740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5