BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926409 Length=463 Score E Sequences producing significant alignments: (Bits) Value AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream op... 728 0.0 AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 728 0.0 > AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream open reading frame 28 | chr1:26695166-26696392 REVERSE LENGTH=1136 Length=1136 Score = 728 bits (394), Expect = 0.0 Identities = 434/453 (96%), Gaps = 3/453 (1%) Strand=Plus/Plus Query 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468 Query 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528 Query 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588 Query 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648 Query 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311 |||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | ||| Sbjct 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708 Query 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371 ||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768 Query 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828 Query 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463 |||||||||||||||| | ||||||||||||| Sbjct 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860 > AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695166-26696392 REVERSE LENGTH=1136 Length=1136 Score = 728 bits (394), Expect = 0.0 Identities = 434/453 (96%), Gaps = 3/453 (1%) Strand=Plus/Plus Query 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468 Query 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528 Query 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588 Query 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648 Query 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311 |||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | ||| Sbjct 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708 Query 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371 ||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768 Query 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828 Query 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463 |||||||||||||||| | ||||||||||||| Sbjct 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22067541811 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5