BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926410 Length=193 Score E Sequences producing significant alignments: (Bits) Value AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream op... 309 6e-84 AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 309 6e-84 > AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream open reading frame 28 | chr1:26695166-26696392 REVERSE LENGTH=1136 Length=1136 Score = 309 bits (167), Expect = 6e-84 Identities = 181/187 (97%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 4 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTTCGCTCTCCC 63 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 131 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTACGCTCTCCC 190 Query 64 TTTCCATCAAAAGGGCGAGCTTTTTC-CTTCCTCTCTTGACATCCTCTGTTTTCGCTTTC 122 |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 191 TTTCCATCAAAAGGGCGAGC-TTTTCTCTTCCTCTCTCGACATCCTCTGTTTTCGCTTTC 249 Query 123 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCAC 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 250 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCGC 309 Query 183 CCC-AAA 188 ||| ||| Sbjct 310 CCCTAAA 316 > AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695166-26696392 REVERSE LENGTH=1136 Length=1136 Score = 309 bits (167), Expect = 6e-84 Identities = 181/187 (97%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 4 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTTCGCTCTCCC 63 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 131 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTACGCTCTCCC 190 Query 64 TTTCCATCAAAAGGGCGAGCTTTTTC-CTTCCTCTCTTGACATCCTCTGTTTTCGCTTTC 122 |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 191 TTTCCATCAAAAGGGCGAGC-TTTTCTCTTCCTCTCTCGACATCCTCTGTTTTCGCTTTC 249 Query 123 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCAC 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 250 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCGC 309 Query 183 CCC-AAA 188 ||| ||| Sbjct 310 CCCTAAA 316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8551229670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5