BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926497 Length=1852 Score E Sequences producing significant alignments: (Bits) Value AT1G71350.1 | Symbols: | eukaryotic translation initiation fac... 2699 0.0 > AT1G71350.1 | Symbols: | eukaryotic translation initiation factor SUI1 family protein | chr1:26888408-26891231 REVERSE LENGTH=1933 Length=1933 Score = 2699 bits (1461), Expect = 0.0 Identities = 1732/1859 (93%), Gaps = 33/1859 (2%) Strand=Plus/Plus Query 2 GAC-ACTACAGGCGAACAGAATGTTCAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 60 ||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 3 GACGACTACAAGCGAACATAATGTTTAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 62 Query 61 TCTCCGGCGCTGACCGGAAAAAACTCCGCCGCACCGTCCGAAATAGGCTTCCCCTTCTAA 120 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 63 TCTCCGGCGCTGACCGGAAAAAACTCCGTCGCACCGTCCGAAATAGGCTTCCCCTTCTTA 122 Query 121 CCGATGAACTCCTCGACGCAATCCTTCCTCCCAAGGTCGAGATAACTCTTTCCAAGTTTC 180 |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 123 CCGATGAACTCCTCGACGCAATTCTTCCTCCCAAGGTCGAGATTACACTTTCCAAGTTTC 182 Query 181 AGAATCGAGTTCTTGTCTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 240 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AGAATCGAGTTATTGTTTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 242 Query 241 GAAGAGGGACTGAGATATTCCCCACAGTTTTTGCTCTCTGGGAGGCTCCTGAAATGTTAC 300 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 243 GAAGAGGAACTGAGATTTTCCCCACAGTTTTTGCTCTGTGGGAGGCTCCTGAAATGTTAC 302 Query 301 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGGTATGTTTTAGGCGGTGCAGATTTGA 360 |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| Sbjct 303 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGTTATATTATAGGCGGTGCAGATTTGA 362 Query 361 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTTTCCTTCTTTCTCTGCTGGAGAAATAT 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 363 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTATCCTTCTTTCTCTGCTGGAGAAATAT 422 Query 421 GGGCTGTCAAAGTTCCTGGAAATCTGGCACCTATTGCGGTTGGGTGTACTACAATGAGTA 480 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 423 GGGCTGTCAAAGTTCCTGGAAATCTAGCACCTATTGCGGTTGGGTGTACCACAATGAGTA 482 Query 481 GTGAAGAAGCCCTTAAAGCAGGTTTGCGTGGGAAGGCTTTACGGATAACTCATTATTACC 540 |||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 483 GTGAAGAAGCTCGTAAAGCAGGTTTACGTGGGAAGGCTTTAAGGATAACTCATTATTACC 542 Query 541 GTGACTTCCTTTGGGAATCAGCTGAGGGGCACTACGTTCCAAATGCTGGTTTTATGGAGA 600 |||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 543 GTGACTTCCTATGGGAATCAGCTGAGGGGCATTATGTTCCAAATGCGGGGTTTATGGAGG 602 Query 601 ATGTTGTCATGGAGGACCCATCGTACCTTGCTTCTGGTTCAGTTGAAGAAATCTCAGACT 660 |||| ||||||||||||||||||||||||||| ||||||||| |||||| || | ||| Sbjct 603 ATGTGGTCATGGAGGACCCATCGTACCTTGCTCCTGGTTCAGGTGAAGATATTTTAGA-- 660 Query 661 CTTCAGCTGGTCCTCAGACAAGCA-CAGAAAT--TGAAGATGAATCTGGTGATGTGAATA 717 || || | || | |||||| | ||||| ||||||||||||| | || | | | Sbjct 661 ---CA-CT--T-CT--G-CAAGCACCGGAAATGAAGAAGATGAATCTGCT-CTG-G-A-A 706 Query 718 ATATTGGGCCTTCAACCTCTGTTACGGATGCTAAGAATGATACTGAAGAACATGTGGTTG 777 | | | ||||||| || | | ||||||||||||||||| |||||| |||||| |||| Sbjct 707 ACA----G-CTTCAACATCGGCTGCGGATGCTAAGAATGATGCTGAAGTACATGTCGTTG 761 Query 778 GGAGCATGAATGAGCTGA-ACTTAGCAGATGACGTTTCTGCTAATGAAGCAAATACCGAC 836 |||||||||||||||| | |||| | |||||| || | ||||| |||| | ||||||||| Sbjct 762 GGAGCATGAATGAGCT-ATACTTGGTAGATGATGTATGTGCTACTGAAACTAATACCGAC 820 Query 837 AAGCAGAATATTCTGTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGCCTTTTGCAA 896 ||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 821 AAGCAGATTACTCTCTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGTCTTTTGCAA 880 Query 897 GCATTGCATACAACACTAAAGGA-AAAGGACCTTCCCATCCCAGGAAGTACTCTGTGGGC 955 ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| Sbjct 881 GCATTGCATACAACACTAAAGGAGAAA-GACCTTCCCATCCCAGGAAGCACTCTATGGGC 939 Query 956 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 999 Query 1016 TAAAAAGCTGTCAAAGTGGCTGCAATCTAAAGCCTCTACTGGAATGATATCTGTTAAAGA 1075 ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| || Sbjct 1000 TAAAAAGTTGTCAAAGTGGCTGCAATCTAAAGCGTCTGGTGGAATGATATCTGTTAAGGA 1059 Query 1076 AGACAAGCATAAGAAGGAGATTGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1135 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1060 AGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1119 Query 1136 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCTGAGTCTCCTGGAGAGCGCTCCAC 1195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1120 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCCGAGTCTCCTGGAGAGCGCTCCAC 1179 Query 1196 AGG-GCAAGCTCAGTCAGAGAAAATGCTTGAAATCATAGAGGTCTATAAACCAAGCATAC 1254 || ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| Sbjct 1180 -GGCGCAAGCTCAGTCAGAGAAAGGGCTTGAAATTATAGAGGTCTATAAATCAAGCATAC 1238 Query 1255 ACAACAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1314 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 ACAATAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1298 Query 1315 AAGCCACTGATGTTGTGTTCAGATACATCGAGAAGGAAAATCTGGTAAAGCCAGCAAACA 1374 |||||||||| |||||||||| |||||| |||||||||||||| ||||||||| |||||| Sbjct 1299 AAGCCACTGACGTTGTGTTCAAATACATTGAGAAGGAAAATCTAGTAAAGCCAACAAACA 1358 Query 1375 AGTCAATGGTGGTGTTGGATCCGATATTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1434 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1359 AATCAATGGTGGTGTTGGATCCGATACTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1418 Query 1435 AGGGATCGGCATATCCGTCAGAGATTCACAAAAAGGATGTTGGATCGACGTTTGTAGGGA 1494 ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | Sbjct 1419 AGGGATCGGCATATCCGTCAGAGATCCACAAAAAGGATGTTGGGTCGACATTTGTAGGTA 1478 Query 1495 GGATGCAGCCTAATCACGTAGTCATGAGAGGCGGTGGTGAACCCGTGGTTCGTAAAGGAG 1554 | |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 1479 GAATGCAGCCTAATCACGTAGTGATGAGAGGAGGCGGTGAACCCGTGGTTCGTAAAGGAG 1538 Query 1555 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACAAAGG 1614 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1539 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACCAAGG 1598 Query 1615 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1658 Query 1675 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1659 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1718 Query 1735 TTCAAGGAGGTGTGATTGATAATCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1794 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1719 TTCAAGGAGGTGTGATTGATAACCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1778 Query 1795 AGAGATACATTGAAGTTCTTGATAAGACTAGGAAA-TGATTTGttttttctttttCATT 1852 |||||||||| |||||||||||||||||||| ||| ||| | ||||||||| ||||||| Sbjct 1779 AGAGATACATCGAAGTTCTTGATAAGACTAG-AAAGTGAATGGTTTTTTCTATTTCATT 1836 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91666195170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5