BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926592
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72290.1 | Symbols: | Kunitz family trypsin and protease in... 612 2e-174
> AT1G72290.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr1:27215789-27216791 FORWARD LENGTH=1003
Length=1003
Score = 612 bits (331), Expect = 2e-174
Identities = 604/732 (83%), Gaps = 34/732 (5%)
Strand=Plus/Plus
Query 3 ACACACAAAACAATCAC-TATGAAGAAACCTTCAGTTCTCTCTTTTCTCATCACTCTCCT 61
||||||| ||||||||| |||||||| |||||||| ||||||||||||||| ||||||
Sbjct 45 ACACACATAACAATCACAAATGAAGAATCCTTCAGTGATCTCTTTTCTCATCATTCTCCT 104
Query 62 GTTGGCTGCAGCTGTCTGCATCCACGGAGGCGAACCGGTGAATGACA-AGGACGGGAATC 120
||| |||||| || | |||| ||||||| ||||||||||| || | | | ||| ||||
Sbjct 105 GTTTGCTGCAACTATTTGCACCCACGGAAATGAACCGGTGAAGGATACA-GCCGGAAATC 163
Query 121 CAGTTAA-ACTCGGTGAACAATACTTCATCCAGCCGGTGAAGTCCAAGACTAACAACGGC 179
|| |||| || | | ||||||||||||||||||||||| ||| || ||| ||| |||||
Sbjct 164 CACTTAACAC-CCGCGAACAATACTTCATCCAGCCGGTTAAGACCGAGAGTAAAAACGGA 222
Query 180 GGTGGTCTTGTCCCAGCCGCCATTAGTA-TACTTCCACCCTTTTGTCCACTTGGAATCAC 238
||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 223 GGTGGTCTTGTCCCAGCCGCCATTA-CAGTACTT---CCCTTTTGTCCACTTGGCATCAC 278
Query 239 CCAAACACTCCTTCCGTACCAACCGGGCCTACCGGTTAGCTTCACATTACCAGACGCTCG 298
||||||||| ||||| |||||||| |||||||||||||||||| |||| | || | |
Sbjct 279 CCAAACACTTCTTCCCTACCAACCCGGCCTACCGGTTAGCTTCGTATTAGC--AC-TTGG 335
Query 299 AG-AGGAAACCTTCGTCCA-GACATCTTTAGCAGTAAACATCGAGTTCAAGTCCAACATC 356
| ||| | | ||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 336 CGTAGG-ATCAACCGT-TATGACATCTTCGGCTGTAAACATCGAGTTCAAGTCCAACATC 393
Query 357 TGG--G-TCTGCAATGAGTTTTCCAAGTTTTGGGAAGTCGATGTTTCCTCATCGGCTAGC 413
||| | | ||||| ||||||||||||||||||||||| |||| ||||||||| ||| |
Sbjct 394 TGGCCGTTTTGCAAGGAGTTTTCCAAGTTTTGGGAAGTTGATGATTCCTCATCAGCTCCC 453
Query 414 GAGGAGCCTCTCA-TTCTCATTGGTGGTACCCCTCAGAAACC-AAATAGTTGGTTTAAGG 471
|||||||| ||| ||||||| ||||||| | | ||| |||||| | |||||||
Sbjct 454 AAGGAGCCT-TCAATTCTCATCGGTGGTAAAA-TGGGGGACCGAAATAGCTCGTTTAAGA 511
Query 472 TTGAGAAAGCCGGAGAAGGAGC-AGGAGCAAACACTTACAAGTTGACCACCTTA-ACCGG 529
|||||||||| ||||||||||| || ||||||| ||| |||||||||||||| || ||
Sbjct 512 TTGAGAAAGCTGGAGAAGGAGCTAG-AGCAAACGTTTATAAGTTGACCACCTTTTAC-GG 569
Query 530 AACCGTTGGAACTAAGCCAGGGGTTTGGTTTGGTGCACCACAATTGGTTGTCCCCAATGA 589
|||||||||| | | |||||||||||||| | ||||||||| | || || |||| ||
Sbjct 570 AACCGTTGGAGCCATCCCAGGGGTTTGGTTAAGCGCACCACAACTAATTATCACCAAGGA 629
Query 590 TGCGGCTAAGCCCTTACTCATCAAATTCAAAAAGGTGGATGATG-TCACTACGGCTACTA 648
| |||||||| |||||||| |||||||||||||||| ||||||| | |||||||||||||
Sbjct 630 TACGGCTAAGACCTTACTCGTCAAATTCAAAAAGGTTGATGATGCT-ACTACGGCTACTA 688
Query 649 -C---TTCTACTACTCGGGTTGAGAAGTTAGGTCTAAGGATGTTCCCATTCTACTAGTCA 704
| || |||| | |||||||| || |||||||||||||||||||| |||||||| |||
Sbjct 689 GCAACTTATACTTCCCGGGTTGATAATTTAGGTCTAAGGATGTTCCCGTTCTACTAATCA 748
Query 705 ACTGGTAAAAAT 716
||||||||||||
Sbjct 749 ACTGGTAAAAAT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5