BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926642
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72770.1 | Symbols: HAB1 | HYPERSENSITIVE TO ABA1 | chr1:273... 2344 0.0
AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6... 981 0.0
> AT1G72770.1 | Symbols: HAB1 | HYPERSENSITIVE TO ABA1 | chr1:27390022-27393281
FORWARD LENGTH=2551
Length=2551
Score = 2344 bits (1269), Expect = 0.0
Identities = 1499/1603 (94%), Gaps = 44/1603 (3%)
Strand=Plus/Plus
Query 1 TCTCTGATTTTTGAGAGCTCATGGAGGAGATGACTCCGGCAGTTGCAATGACTCTGAGCT 60
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 566 TCTCTGATTTTGGAGAGCTCATGGAGGAGATGACTCCCGCAGTTGCAATGACTCTTAGCT 625
Query 61 TAGCAGCTAACACCATGTGTGAATCATCGCCTGTAGAGATCACTCAGCTTAAGAACGTTA 120
||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 626 TAGCAGCCAACACCATGTGTGAATCATCACCTGTCGAGATCACTCAGCTAAAGAACGTTA 685
Query 121 CTGATGCAGCTGACTTGTTATCTGA-TCAAGAAAATGAAAGCTTTTGCAACGGAGGGACT 179
||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 686 CTGATGCAGCTGACTTGTTATCTGATTC-TGAAAATCAAAGCTTTTGCAACGGAGGGACT 744
Query 180 GAATG--C----------G---CT--A-TGGAAGAGGTAGGCGAACCGGATTTGTTGAAA 221
||||| | | || | ||||||||||||| |||| |||||||||||||
Sbjct 745 GAATGCACTATGGAAGATGTTTCTGAACTGGAAGAGGTAGGTGAACAGGATTTGTTGAAA 804
Query 222 ACTTTATCCGATACGAGAAGCGGGTCTTCTAATGTTTTTGACGAAGACGAGGTATTGTCT 281
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 805 ACTTTATCCGATACGAGAAGCGGGTCTTCCAATGTTTTTGATGAAGACGATGTATTGTCT 864
Query 282 GTTGTGGAGGATAATAGTGCTGTCATAAGTGAGGGCTTGTTAGTTGTTGATGCAGGCTCT 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GTTGTGGAGGATAATAGTGCTGTCATAAGTGAGGGCTTGTTAGTTGTTGATGCAGGCTCT 924
Query 342 GAATTAAGCTTGTCTGATACAGCTATGGAAATAGATAACGGGCGAGTGCTTGCCACAGCG 401
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 925 GAATTAAGCTTGTCTAATACAGCTATGGAAATAGATAACGGGCGAGTTCTTGCAACCGCG 984
Query 402 ATTATCGTAGGCGAATCAAGCATCGAGCAGGTTCCCACTGCGCAAGTTCTTATCGCGGGT 461
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 985 ATTATCGTAGGCGAATCAAGCATTGAGCAGGTTCCCACCGCGGAAGTTCTTATCGCGGGT 1044
Query 462 GTGAATCAGGATACAAATAGAGAAGATGGTCCAGGTGTAACGGCTTCAGAGGTTGTCATT 521
|| ||||||||||| |||| | | | ||| || | ||||||||
Sbjct 1045 GTAAATCAGGATACCAATA-----------C----T-T--CGG----AG-G-TTGTCATT 1080
Query 522 CGATTGCCAGAAGAAAATAGTAATCATCTGGTGAAAGGGAGAAGTGTTTATGAACTAGAT 581
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATTGCCAGATGAAAATAGTAATCATCTGGTGAAAGGGAGAAGTGTTTATGAACTAGAT 1140
Query 582 TGTATACCGCTTTGGGGCACGGTTTCAATTCAAGGTAATAGATCTGAGATGGAGGATGCT 641
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1141 TGTATACCGCTTTGGGGCACGGTTTCCATTCAAGGGAATAGATCTGAGATGGAGGATGCT 1200
Query 642 TTTGCCGTGTTACCTCATTTTCTGAAATTACCCATCAAAATGCTAATGGGGGACCATGAG 701
|||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1201 TTTGCCGTGTCACCTCATTTTCTGAAACTACCCATCAAAATGCTTATGGGGGACCATGAG 1260
Query 702 GGTATGAGTCCAAGCCTCACACACCTCACCGGTCATTTTTTCGGTGTTTATGATGGCCAC 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 GGTATGAGTCCAAGCCTCACACACCTCACCGGTCATTTTTTCGGTGTTTATGATGGTCAT 1320
Query 762 GGAGGCCATAAGGTTGCTGACTATTGCCGAGATAGACTCCATTTTGCTTTGGCTGAAGAA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGAGGCCATAAGGTTGCTGACTATTGCCGAGATAGACTCCATTTTGCTTTGGCTGAAGAA 1380
Query 822 ATAGAACGTATAAAAGACGAATTATGCAAGAGAAACACAGGAGAGGGTAGGCAGGTCCAG 881
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1381 ATAGAACGTATAAAAGACGAATTATGCAAGAGGAATACAGGAGAGGGTAGGCAGGTGCAG 1440
Query 882 TGGGATAAAGTCTTCACTAGTTGTTTTCTTACCGTCGATAGTGAGATTGAAGGAAAAATT 941
||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||
Sbjct 1441 TGGGATAAAGTCTTCACGAGTTGTTTTCTAACTGTCGATGGTGAGATTGAAGGAAAAATT 1500
Query 942 GGCAGAGCCGTTGTTGGTTCTTCTGATAAGGTTCTCGAGGCTGTTGCCTCTGAGACCGTA 1001
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1501 GGTAGAGCCGTTGTTGGTTCTTCTGATAAGGTTCTTGAGGCTGTTGCGTCTGAGACCGTA 1560
Query 1002 GGATCAACTGCTGTGGTTGCTTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGT 1061
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GGATCAACTGCTGTTGTTGCCTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGT 1620
Query 1062 GATTCAAGGGCCGTTTTATTCCGTGGCAAAGAAGCCATGCCCTTATCAGTTGATCACAAA 1121
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1621 GATTCGAGGGCGGTTTTATTCCGTGGCAAAGAAGCCATGCCCTTGTCAGTTGATCACAAA 1680
Query 1122 CCAGATAGAGAGGATGAATACGCAAGAATAGAAAATGCTGGAGGCAAAGTCATACAATGG 1181
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1681 CCAGATAGAGAGGATGAATATGCAAGAATAGAAAATGCTGGAGGCAAAGTTATACAATGG 1740
Query 1182 CAAGGCGCACGTGTTTTTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGATATCTG 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CAAGGCGCACGTGTTTTTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGATATCTG 1800
Query 1242 AAGCCATATGTGATCCCAGAACCGGAAGTGACATTCATGCCTCGGTCAAGAGAAGACGAG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 AAGCCATATGTGATCCCAGAACCGGAAGTGACATTCATGCCTCGGTCAAGAGAAGACGAG 1860
Query 1302 TGTCTGATACTAGCCAGTGACGGTCTTTGGGATGTAATGAGCAACCAAGAAGTTTGCGAA 1361
||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1861 TGTCTCATACTAGCCAGTGACGGTCTTTGGGATGTAATGAACAACCAAGAAGTCTGCGAA 1920
Query 1362 ATAGCAAGGAGACGGATCTTGATGTGGCACAAGAAGAACGGAGCACCGCCTCTATCAGAG 1421
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1921 ATAGCAAGGAGACGGATATTGATGTGGCACAAGAAGAACGGTGCACCGCCTCTAGCAGAG 1980
Query 1422 AGAGGCAAAGGAACAGACCCAGCTTGCCAAGCCGCGGCTGACTACCTCTCAATGCTTGCT 1481
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1981 AGAGGCAAAGGAATAGATCCAGCTTGCCAAGCCGCAGCTGACTACCTCTCAATGCTTGCT 2040
Query 1482 CTTCAAAAAGGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGA 1541
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CTACAAAAAGGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGA 2100
Query 1542 AAGTTCAAGACCAGAACCTGAAGCTTAATTACAAACAGTACGC 1584
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2101 AAGTTCAAGACCAGAACCTGAAGCTTAATTACAAGCAGTACGC 2143
> AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6037289
FORWARD LENGTH=2441
Length=2441
Score = 981 bits (531), Expect = 0.0
Identities = 1033/1268 (81%), Gaps = 64/1268 (5%)
Strand=Plus/Plus
Query 322 TAGTTGTTGATGC-AGGCTCTGA-ATTAAGCTTGTCTGATACAGCTATGGAAA-TAGATA 378
||||||| || || ||| ||||| | |||| ||| | ||||||| | | |||| | ||||
Sbjct 863 TAGTTGTGGACGCTAGG-TCTGAGA-TAAGTTTGCCAGATACAG-T-T-GAAACT-GATA 916
Query 379 ACGGGCGAGTGCTTGCCACAGCGATTATCGTAGGCGA-ATCAAGCATCGAGCAGGTTCCC 437
|||||||||| ||||| || || |||||| || ||| | ||| ||| || |||||||||
Sbjct 917 ACGGGCGAGTTCTTGCTACGGCCATTATCCTAAACGAGA-CAACCATAGAACAGGTTCCC 975
Query 438 ACTGC-GCAAGTTCTTATCGCGGGTGTGAATCAGGATACAAATAGAGAAGATGGTCCAGG 496
||||| | |||| ||||| ||| || |||||| || || | ||| |||| |||
Sbjct 976 ACTGCAG-AAGTCCTTATTGCGAGTCTGAATC-----AC-GAT-GTGAATATGG---AGG 1024
Query 497 T-GTAACGGCTTCAGAGGTTGTCATTCGATTGCCAGAAGAAAATAGTAAT-CATCTGGTG 554
| | || |||| ||||| |||||| | || || ||||||||| |||| | | | |
Sbjct 1025 TGGCAA---CTTCTGAGGTAGTCATTAGGTTACCTGAAGAAAATCCTAATGTAGCAAGAG 1081
Query 555 AAAGGGAGAAGTGTTTATGAACTAGATTGTATACCGCTTTGGGGCACGGTTTCAATTCAA 614
|| | || ||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1082 GAA-GCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGGCACGATTTCAATTTGC 1140
Query 615 GGT-AATAGATCTGAGATGGAGGATGCT-TTTGCCG-TGTTACCTCATTTTCTGAAATTA 671
||| | |||||||| |||||||||||| || | | | |||||||||||||| ||| ||
Sbjct 1141 GGTGGA-AGATCTGAAATGGAGGATGCTGTTAG-AGCT-TTACCTCATTTTCTCAAAATA 1197
Query 672 CCCATCAAAATGCTAATGGGGGACCATG-AGGGTATGAGTCCAAGCCTCACACACCTCAC 730
|||||||||||||| |||||||| |||| |||| ||||||||||| ||| || | |||||
Sbjct 1198 CCCATCAAAATGCTTATGGGGGATCATGAAGGG-ATGAGTCCAAGTCTCCCATATCTCAC 1256
Query 731 CGGTCA-TTTTTTCGGTGTTTATGATGGCCACGGAGGC-CATAAGGTTGCTGACTATTGC 788
|||| || ||| ||||| |||||||||||||||||| | | |||||||||||||||||
Sbjct 1257 TAGTCACTTCTTT-GGTGTATATGATGGCCACGGAGGCGC-TCAGGTTGCTGACTATTGC 1314
Query 789 CGA-GATAGACTCCATTTTGCTTTGGCTGAAGAAATAGAACGTATAAAAGACGAATTATG 847
| | |||||| |||| | |||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct 1315 C-ATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGAATTGTG 1373
Query 848 CAAGAGAAACACAGGAGAGGGTAGGCAGGTCCAGTGGGATAAAGTCTTCACTAG-TTGTT 906
| ||| ||||| || ||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 1374 TAGGAGGAACACTGGCGAGGGTAGGCAGGTCCAGTGGGAGAAAGTCTT-TGTAGATTGTT 1432
Query 907 TTCTTACCGTCGATAG-TGAGATTGAAGGAAAAATTGGCAGAGCC-GTTGTTGGTTCTTC 964
|| | |||||| | |||| || |||| ||||| |||| || ||||||||||||||
Sbjct 1433 ACCTAAAAGTCGAT-GATGAGGTTAAAGGGAAAATCAACAGA-CCTGTTGTTGGTTCTTC 1490
Query 965 TGATA--A-GGTTCTCGAGGCTGTTGCCTCTGAGACCGTAGGATCAACTGCTGTGGTTGC 1021
||||| | |||||| || |||||| || |||| ||||| ||||| ||||||||||||||
Sbjct 1491 TGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGATCGACTGCTGTGGTTGC 1550
Query 1022 TTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGTGATTCAAGGGCCGTTTTATT 1081
||||||||| ||||| |||||| |||| || ||||| ||||| ||||| || |||||| |
Sbjct 1551 TTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCAAGAGCAGTTTTACT 1610
Query 1082 CCGTGGCAAAGAAGCCATGCCCTTATCAGTTGATCACAAACCAGATAGAGAGGATGAATA 1141
||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1611 CCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGAGTA 1670
Query 1142 CGCAAGAATAGA-AAATGCTGGAGGCAAAGTCATACAATGGCAAGGCGCACGTGTTTTTG 1200
||| ||||||| ||| |||||||| ||||| ||||||||||||||||| ||||||| ||
Sbjct 1671 TGCACGAATAGAGAAA-GCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTCTG 1729
Query 1201 GTGTTCTCGCCATGTCTAGGTCCATCGGTGA-CAGATATCTGAAGCCATATGTGATCCCA 1259
| ||||| |||||||| |||||||||||||| || ||||||| |||||| ||| || |||
Sbjct 1730 GCGTTCTTGCCATGTCCAGGTCCATCGGTGATCA-ATATCTGGAGCCATTTGTAATACCA 1788
Query 1260 GAACCGGAAGTGACATTCATGCCTCG-GTCAAGAGAAGACGAGTGTCTGATACTAGCCAG 1318
|| || |||||||| || ||||| || | | ||||||||||||||||| ||| | |||||
Sbjct 1789 GATCCCGAAGTGACGTTTATGCCACGAG-CTAGAGAAGACGAGTGTCTAATATTGGCCAG 1847
Query 1319 TGACGGTCTTTGGGATGTAATGAGCAACCAAGAAGTTTGCGAAATAGCAAGGAGACGGAT 1378
||| || |||||||| |||||||| |||||||||| |||||| | || ||||| |||||
Sbjct 1848 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTTGCGAGGAGGCGGAT 1907
Query 1379 CTTGA-TGTGGCACAAGAAGAACGGAGCACCGCCTCTATCAGAGAGAGGCAAAGGA-ACA 1436
|||| | |||||||||||||| |||||| |||| || | |||||||| |||| | |
Sbjct 1908 CTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAGAGGTGTAGGAGA-A 1965
Query 1437 GACCCAGCTTGCCAAGCCGCGGCTGACTACCTCTC-AATGCTTGCTCTTCAAAAAGGAAG 1495
|||| ||| || ||||| |||||||| || ||||| || || ||| |||||| |||||
Sbjct 1966 GACCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAA-CTCGCTATTCAAATGGGAAG 2024
Query 1496 TAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGAAAGTTCAAGACCAG 1555
|||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2025 CAAAGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAG 2084
Query 1556 AACCTGAA 1563
| | ||||
Sbjct 2085 ATCTTGAA 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5