BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926675 Length=1256 Score E Sequences producing significant alignments: (Bits) Value AT1G73060.1 | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:2... 2106 0.0 > AT1G73060.1 | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27478970-27481448 FORWARD LENGTH=1324 Length=1324 Score = 2106 bits (1140), Expect = 0.0 Identities = 1205/1237 (97%), Gaps = 1/1237 (0%) Strand=Plus/Plus Query 21 ATGGCGATGGCGATGTTACCGGCTCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 80 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 64 ATGGCGATTGCGATGTTACCGGCGCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 123 Query 81 AGATGCGGAGCCACAGCTAACAGCGGCGGCGCACTCTCATCTACTTCTTCTGACTCCGAT 140 |||||||||||||| || ||||||||||||||| ||||||||||||||||| | |||||| Sbjct 124 AGATGCGGAGCCACCGCAAACAGCGGCGGCGCAATCTCATCTACTTCTTCTAATTCCGAT 183 Query 141 CTTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 200 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 CCTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 243 Query 201 GCCAATTCTCTTGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATTGATTTTCCA 260 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 244 GCCAATTCTCTAGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATCGATTTTCCA 303 Query 261 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCGTCAGACGACTTTATTGATGCTAAT 320 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 304 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCTTCAGACGACTTTATTGATGCTAAT 363 Query 321 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATTGAGACAAGAGCTTGC 380 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 364 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATCGAGACCAGAGCATGC 423 Query 381 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 483 Query 441 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTAGTTCTGTCACC 500 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 484 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTACTTCTGTCACC 543 Query 501 AATTTCTTCAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 560 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 AATTTCTTTAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 603 Query 561 ACTTGGGAGCCCAAGGAGCCTCCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 620 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 604 ACTTGGGAGCCCAAGGAGCCACCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 663 Query 621 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 723 Query 681 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTCCCCCCTAAAGAT 740 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 724 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTTCCCCCTAAAGAT 783 Query 741 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 784 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 843 Query 801 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTAAACTACAACGGAGCACTTTTCCGACAA 860 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 844 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTGAACTACAACGGAGCACTTTTTCGACAA 903 Query 861 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATATGCGTGTGTTGCA 920 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 904 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATTTGCGTGTGTTGCA 963 Query 921 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTGCAGGTTCTGGGA 980 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 964 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTACAGGTTCTGGGA 1023 Query 981 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1083 Query 1041 TGGTGGGAAGAGGATGTGGAGCTTGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1100 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1084 TGGTGGGAAGAGGATGTGGAGCTCGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1143 Query 1101 AAGTCATGGATTCACACTTTTGGTATGTTTGTTAAGTCCCTCAAGATCGAGATATTTACA 1160 ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| Sbjct 1144 AAGTCATGGATTCACACTTTTGGTAAGTTTGTTAAGTCTCTCAAGATTGAGATATTTACA 1203 Query 1161 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATAAAGG 1220 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1204 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATTAAGG 1263 Query 1221 ATAGTTTGAAAATGATGTCTATATA-AACTCAGTCCA 1256 ||||||| || ||| | |||||||| ||||||||||| Sbjct 1264 ATAGTTTCAATATGTTTTCTATATATAACTCAGTCCA 1300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61746670350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5