BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926704
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73325.1 | Symbols: | Kunitz family trypsin and protease in... 998 0.0
> AT1G73325.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr1:27567518-27568186 REVERSE LENGTH=669
Length=669
Score = 998 bits (540), Expect = 0.0
Identities = 622/663 (94%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 21 ATGAAGAAGCTTACTTTGTCTTTCATCACTCTCACAGTTCTCTCAGCCCTCTTGACAGCA 80
||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||
Sbjct 1 ATGGAGAAGCTTACTTTGTCTTTCATCACTCTCACCGTTCTCTCAGCCATCTTCACCGCA 60
Query 81 GCTTCAGCGGCCGATGCTGTACCAAGCCAAGTAGTCCTGGACACAGCTGGACATCCGGTT 140
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 61 GCTTCAGCGGCCGATGCTACACCAAGCCAAGTAGTCCTAGACATAGCTGGACATCCGGTT 120
Query 141 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 180
Query 201 CCTTCGAACCGAAACTTAAACACACAAGACTTGTGTCTGAATCTCGACATTGTCCAATCA 260
||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CCTTCAAACCGAAATTTAAGCACACAAGACTTGTGTCTGAATCTTGACATTGTCCAATCA 240
Query 261 TCATCTCCATTCGTCTCAGGCCTTCCCGTAACTTTCTCCCCACTCAACACTAAAACCAAG 320
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 241 TCATCTCCTTTCGTCTCAGGCCTTCCCGTAACATTCTCCCCACTAAACACCAAAGTCAAG 300
Query 321 CATGTCCAGCTCTCAACTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGTCCT 380
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CATGTTCAGCTCTCAGCTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGCCCT 360
Query 381 GAATCCAAGGTCTGGAGAATCGACCACTCTGTACAACTAAGGAAGAGCTTTGTAAGCACT 440
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 361 GACTCCAAAGTGTGGAGAATCGACCACTCTGTACAACTAAGAAAGAGCTTTGTAAGCATT 420
Query 441 GGTGGTGAGAAAGGTAAAGGTAATAGCTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 500
|||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGTGGTCAGAAAGGTAAGGGTAATAGTTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 480
Query 501 AAGCTTATGTATTGTCCGATTAGCTCCACTATTGCGTGTATTAATGTGAGTTTGGAGACT 560
||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
Sbjct 481 AAGCTTATGTATTGTCCTATTAGCTCCATTGTTGCGTGTATTAATGTGAGTTTGGAGATT 540
Query 561 GATAATCTTGGAGTTCGACGTTTGGTTCTTAGCACTGATCAATCTTTCGCTGTTAAGTTT 620
||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 541 GATGATCATGGAGTTCGACGTTTGGTTCTTAGCACTGATCAGTCTTTCGTTGTTAAGTTT 600
Query 621 CAGAAGGCTTATGATTCAAACTCCAACTGTCATCTTAAGTCTAACTCGAGGATGTTCCCT 680
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 601 CAGAAGGCTTATGATTCAAACTCCAACTGTAATCTTAAGTCTAACTCGAGAATGTTCCTT 660
Query 681 TTT 683
|||
Sbjct 661 TTT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5