BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926713 Length=1315 Score E Sequences producing significant alignments: (Bits) Value AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-... 2109 0.0 AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-... 1376 0.0 > AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:27590810-27594198 REVERSE LENGTH=1579 Length=1579 Score = 2109 bits (1142), Expect = 0.0 Identities = 1252/1306 (96%), Gaps = 4/1306 (0%) Strand=Plus/Plus Query 4 TTCGTTAAGCTCTAGAAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACA 63 ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 34 TTCGTTAAGCTTTAGAAATGGGATGCTTTGCATCAAGGCCGAATGATACTGGTGGAAACA 93 Query 64 GAAGAAAGCCAACGAGCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCC 123 |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 94 GAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGATACCTA 153 Query 124 AGCCTGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCT 183 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 154 AGCCCGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTGGAGCGCT 213 Query 184 TGACAGCTTTAAGAACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAA 243 ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 214 TGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACTATAACAA 273 Query 244 GAACTAGGAGGAAGACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGG 303 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 274 GAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCACGCTTTGG 333 Query 304 AAGATTATCTACCTGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAG 363 |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 334 AAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATTCAAAG 393 Query 364 TACAGTTTAATTGGGTAAATCAGGAAGATG-AGCAAGAGGAAACAGCCATATCAAACGTT 422 |||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||| Sbjct 394 TACAGTTTAATTGGGTAAATCAGGAAGATGAAG-AAGAGGAAACAGCCATGTCAAATGTT 452 Query 423 TGGTATGAAATACTGTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAAT 482 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 453 TGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAAGCCAAT 512 Query 483 TTACTACTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAGATATCAGAAGAAAAT 542 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 513 TTACTGCTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAAATATCAGAAGAAAAT 572 Query 543 AGGCGAGCTTCAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAG 602 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 573 AGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGTGCTGTGAAG 632 Query 603 CATGTTCTTCCTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAA 662 |||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 633 CATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGACCTAGCAGAA 692 Query 663 GGCGCTTTACGAGCACTTTGTTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 722 || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 693 GGAGCTTTACGTGCACTTTGCTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 752 Query 723 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATG 782 |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 753 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTTTCATGTGAAATG 812 Query 783 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 872 Query 843 GGCGAAAAGCATA-GTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 901 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 GGCGAAAAGCATATG-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 931 Query 902 CTACTACCACGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGT 961 ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 932 CTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACATGGCATGGCGGT 991 Query 962 TGCTGCTTTACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1021 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 992 TGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1051 Query 1022 TAACACCTCTTCACCCACATCAAGGACTCCTCCACTTTTCGGGACAATGAAATATCTATC 1081 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 1052 TAACACCTCTTCACCCACGTCAAGGACTCCTTCACTTTTCGGGACAATGAAATATCTATC 1111 Query 1082 AGAGAAAATACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTA 1141 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1112 AGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTGATCTATACTCTTA 1171 Query 1142 TGAAAAGATCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1201 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1172 TGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1231 Query 1202 TGAGTACCAACTTCCTTCTGTCGATGCGTCATGGTCTGAAGCCAGTCTACAGACTaaaaa 1261 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1232 TGAGTACCAACTTCCTTCTGTTGATGCGTCATGGTCTGAAGCCAGTCTACGGACTAAAAA 1291 Query 1262 aaCATCAAATCACATAAAGGGCAACCAACGATAGAGCAGTGAATAG 1307 ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1292 CACATCAAATCACATATAGGGCAACCAAAGATAGAGCAGTGAATAG 1337 > AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:6169341-6173222 REVERSE LENGTH=1734 Length=1734 Score = 1376 bits (745), Expect = 0.0 Identities = 1074/1234 (87%), Gaps = 17/1234 (1%) Strand=Plus/Plus Query 19 AAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACAGAAGAAAGCCAACGA 78 |||||||||||||||| |||| |||||| ||| | ||||| ||||||||||||||||| | Sbjct 235 AAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAA 294 Query 79 GCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCCAG-CCTGTGGAGTTT 137 ||||||| || ||||| ||||| |||||||||||||||||| ||||| | ||||| ||| Sbjct 295 GCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA-CCCAGAGCGGTGGA-TTT 352 Query 138 TCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCTTGACAGCTTTAAG 196 | | |||||||| ||||||||||| || |||||| | ||||| ||||||||||||||||| Sbjct 353 TTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAG 412 Query 197 AACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAAGAACTAGGAGGAA 256 |||||| || || |||||||| |||||||||||||| || || || ||||||||||| || Sbjct 413 AACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAA 472 Query 257 GACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGGAAGATTATCTACC 316 |||||| ||||||||||| || ||| |||||||||||||||||| |||||||||||| Sbjct 473 GACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACC 532 Query 317 TGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAGTACAGTTTAATTG 376 |||| |||| |||||||||||||||||||||||| |||| | ||||| || |||||||| Sbjct 533 TGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTG 592 Query 377 GGTAAATCAGGAAGATGAGCAAGAGGAAACAGCCATATCAAACGTTTGGTATGAAATACT 436 |||||||||||| |||||| |||||||||||| || |||||||||||||||||| | | Sbjct 593 GGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTT 652 Query 437 GTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAATTTACTACTTCTTCC 496 || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 653 ATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCC 712 Query 497 TAGAGGTTCCAGTGATGG-CT-A-TCATCC-AAAGATATCAGAAGAAAATAGGCGAGCTT 552 ||||||||| |||||||| | | |||||| |||| |||| |||||||| || ||| ||| Sbjct 713 TAGAGGTTCTAGTGATGGTCACAATCATCCGAAAG-TATCCGAAGAAAACAGACGAACTT 771 Query 553 CAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAGCATGTTCTTC 612 | || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| | Sbjct 772 CGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCC 831 Query 613 CTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAAGGCGCTTTAC 672 | |||||||| | |||| ||||||||||||||||||||| |||||||||| || ||| Sbjct 832 CCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTAC 891 Query 673 GAGCACTTTGTTTGCAAGCA-TTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATT 731 | || ||||| ||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 892 GGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATATCCAACTTGGCATGGCGATT 950 Query 732 GATAG-TGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATGGTGAAATA 790 ||||| | |||| ||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 951 GATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATA 1009 Query 791 CTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAA 850 |||||||||||||||||||| ||||||||||| || |||||||| || ||||| ||||| Sbjct 1010 TTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAA 1069 Query 851 GCATAGTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCA 910 |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1070 GCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCA 1129 Query 911 CGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGTTGCTGCTTT 970 |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct 1130 TGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTT 1189 Query 971 ACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTC 1030 ||| ||||||||||| |||||||||||||||||||||||| || || || ||| |||| Sbjct 1190 ACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTC 1249 Query 1031 TTCACCCACATCAAGGACTCCTCCACT-TTTCGGGACAATGAAATATCTATCAGAGAAAA 1089 | | || || ||||| || || || || ||| || ||||||||||||||| | ||||||| Sbjct 1250 TGCGCCTACTTCAAGAACACCGCCCCTCTTT-GGAACAATGAAATATCTAACTGAGAAAA 1308 Query 1090 TACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTATGAAAAGA 1149 | |||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||| | Sbjct 1309 TCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAA 1368 Query 1150 TCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACC 1209 |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| | Sbjct 1369 TCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATC 1428 Query 1210 AACTTCCT-TCTGTCGATGCGTCATGGTCTGAAG 1242 ||||||| || | ||| || || | |||||||| Sbjct 1429 AACTTCCACTC-GCCGAAGCTTCGTAGTCTGAAG 1461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64708502505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5