BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926719
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73470.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1677 0.0
> AT1G73470.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages. | chr1:27625149-27627714
FORWARD LENGTH=1243
Length=1243
Score = 1677 bits (908), Expect = 0.0
Identities = 1047/1110 (94%), Gaps = 25/1110 (2%)
Strand=Plus/Plus
Query 9 GTGACTGATTCAGATGACCAGTGTCTCCGTCGCCGTCGTAGCTCCTCCGCATCGTTGCCC 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 GTGACTGATTCAGATGACCAGTGTCTCCGTCGCCGTCGTAGCTCCTCCGCATCGTTGCCC 106
Query 69 ATTCTCTCGTCATCTGAGTCTGACCAAGCTTTCTCTTCAAATTCCTAGAACCGGCTGGCG 128
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 107 ATTCTCTAGTCATCTGAATCTGAACAAGCTTTCTCTTCAAATTCCTAGAACCGGCTGGCG 166
Query 129 GAGGAAACAGATAGGGTTTGCTTTAGCTTC-AGCTGCGGCTTCAGAATCGCCATCGCAAG 187
|||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 167 GAGGAAACAGCTAGGGTTTGCTTTAGCTTCTA-CTGCGGCTTCAGAATCGCCATCGGAAG 225
Query 188 CTACCTATGATCCGGAGCTCCGTTTAGTTTTCGAACTCGCTACCGATTCTGAGTTGTATG 247
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 226 CTACATATGATCCGGAGCTCCGTTTAGTTTTCGAGCTCGCTACCGATTCCGAGTTATATG 285
Query 248 AGCTTGAGAAAATCCTTTTTGGTCCCAGCTACTTCAGCCCTTTGCTGAAATCAATCCCAA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AGCTTGAGAAAATCCTTTTTGGTCCCAGCTACTTCAGCCCTTTGCTGAAATCAATCCCAA 345
Query 308 ACAAAGGAGGAGGTGACCGGCTAATGATAGGCCAAGACATTCAAGTGCGAGATGGTTATA 367
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 346 ACAAAGGAGGAGGTGACCGGCTTATGATAGGCCAAGACATTGAAGTGCGAGATGGTTTTA 405
Query 368 TTGAAGCTCTTGAATCGAGATTCTTGTTTCTCGCTGCAGATGCACGCTCAACACTCAGGG 427
| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 406 TCGAAGCTCTTGAATCGAGATTCTTGTTTCTAGCTGCAGATGCTCGTTCAACACTCAGGG 465
Query 428 GTTGGAGGCCTTCATACAAAAACGTTTTACTTGCGGTGATAAATAATTTTAATATTCCCT 487
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 466 GTTGGAGGCCTTCATACAGAAACGTTTTACTTGCGGTGAGAAATAATTTGAATATTCCCT 525
Query 488 GCTCCAGCCAATTGCCAACCGAAGACCTAGAAGCAGAGATTTTTCTTTATCTTGTCGACA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GCTCCAGCCAATTGCCAACCGAAGACCTAGAAGCAGAGATTTTTCTTTATCTTGTCGACA 585
Query 548 ATTTCTCGAGTGAAGCATCCGGGGTTTTTCCAGGCTTGTGGGAGAATTCTGAAGTCTCAG 607
||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 586 ATTTCTCGAGTGAAGCATCAGGGGTTTTTCCAGGCATGTGGGAAAATTCTGAAGTCTCAG 645
Query 608 AGGCAAAGGGAAGCTTAGAACTCGGGCTCAGTAAATGGAAAGTTGAACTACTTGCTGCAC 667
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 646 AGGCAGAGGGAAGCTTAGAACTCGGGCTCAGTAAATGGAAAGTTGAACTACTTGCCGCAC 705
Query 668 TACAAGTTGGTGCTACAGAGGTCCAATCTATGATTCTGAAGGGTGGCGGCATGATCACAT 727
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 706 TACAAGTGGGTGCTACAGAGGTCCAATCTATGATTCTGAAGGGTGGTGGCATGATCACAT 765
Query 728 TTGCCAAAGTTTATCAGTTGTTGGCTAAGAAACTAT-TGGGAAAAGTATTCCTTGAAGCT 786
| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 766 TCGCCAAAGTTTATCAGTTGTTGGCTAAGAAACTATCTGG-AAAAGTATTCCTTGAAGCT 824
Query 787 GCCAACTACCAGATTAGGAAAGAGATGCTAAAAAAGGGTGGACAGTTAGCTGCCATTAAC 846
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 825 GCCAACTACCAGATTAGGAAAGAGATGCTAAAAAAGGGTGGGCAGTTTGCTGCCATTAAC 884
Query 847 TTGGAATCTCGAGCAGCCCTGCTT-GCAGCAAAGCATGGCTTTGCAGGAGCTGCATCCAG 905
||||||||||||||||| ||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 885 TTGGAATCTCGAGCAGCTCTG-TTAGCAGCGAAGCATGGATTTGCAGGGGCTGCATCCAG 943
Query 906 ATACATTGGCTTAAGAACAGCGATGCAATTACTCGGCCCCATGATGTGGGGGACATTACT 965
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 944 ATACATTGGCTTAAAAACAGCGATGCAATTACTTGGCCCCATGATGTGGGGGACATTACT 1003
Query 966 GGCTGACTTAGTTATTCAGATGCTCGAGACTGACTACGCTAGAATCTTAAGAGCAATTTA 1025
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1004 GGCTGACTTAGTGATTCAGATGCTCGAGACTGACTACGCTAGAATCCTAAGAGCAATTTA 1063
Query 1026 CGCTTTTGC------T------------CAGATTCGGATCACCAGGACATACAGGCTACC 1067
||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1064 CGCATTTGCACAGGATTGTTTTGTTTTGCAGATTCGGATCACCAGGACATACAGGCTACC 1123
Query 1068 TTGTAAATGAAGTAACAGTTTTGTTTTCTC 1097
||||||||||||||||||||| ||||||||
Sbjct 1124 TTGTAAATGAAGTAACAGTTT-GTTTTCTC 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5