BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926743 Length=2010 Score E Sequences producing significant alignments: (Bits) Value AT1G73680.2 | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27... 2543 0.0 > AT1G73680.2 | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704194-27707518 REVERSE LENGTH=2051 Length=2051 Score = 2543 bits (1377), Expect = 0.0 Identities = 1478/1528 (97%), Gaps = 2/1528 (0%) Strand=Plus/Plus Query 468 TGTAGTGGCGACAAAGTTGTTAGCTAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 527 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 503 TGTAGTGGCGACAAAGTTGTTAGCGAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 562 Query 528 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 622 Query 588 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAATGGATGTCCATTGAAGTC 647 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 623 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAGTGGATGTCCATTGAAGTC 682 Query 648 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGGTGATCACCACAAATCTGGCGCTGT 707 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 683 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGATGATCACCACAAATCTGGCGCTGT 742 Query 708 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGGCCGGAAT 767 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 743 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGACTGGAAT 802 Query 768 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 862 Query 828 GAGGGACGAAAGAGGTGTTACTATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 887 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 863 GAGGGACGAAAGAGGTGTTCCGATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 922 Query 888 TCTGTTGCAAGCTCTCTTTGTGAAAGAACATAACTCTGTCTGTGATATGCTCAAAGAACG 947 ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 923 TCTGTTGCAAGCTCTCTTTGTCAAAGAACACAACTCCGTCTGTGATATGCTCAAAGAACG 982 Query 948 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTGGTGACTGCAGCGGT 1007 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 983 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTTGTGACAGCAGCGGT 1042 Query 1008 TATCGCTAAGGTTCATACAATCGATTGGACAATAGAACTCTTGAAA-ACAGACACACTCA 1066 |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| Sbjct 1043 TATCGCTAAGGTTCATACGATCGATTGGACAATAGAACTCTT-AAAGACAGACACACTCA 1101 Query 1067 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTAGGGAAGAAAGTGAAGGACATGGTCG 1126 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1102 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTTGGGAAGAAAGTGAAGGACATGGTTG 1161 Query 1127 GAGCAAGATTTGGTCCTATATTTAGCGGCTTAGTTGGTCTGAAGAAACCGAAAGATCATG 1186 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1162 GAGCAAGATTTGGTCCTCTATTTAGCGGATTAGTTGGTCTGAAGAAACCGAATGATCATG 1221 Query 1187 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1222 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1281 Query 1247 CAGAGACACTTATCCTCCGAGATATGAAATCTGAGAATGTTGACAAAGCAAACCCTGCAA 1306 ||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 1282 CAGAGACACTTATACTCCGAGATATGAACTCTGAGAATGTAGACAAAGAAAACCCTGCAA 1341 Query 1307 TAGAACGAGAGATACCGATGACAGAACTGATCGGGAAAGAAGCAGGACTAAAGGGTTCGA 1366 |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||| Sbjct 1342 TAGAACGAGAGATACCGATGACGGAACTGATCGGGAAAAAAGCAGGAGAAAAGGCTTCGA 1401 Query 1367 AAATTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGGGCATTGACAT 1426 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1402 AACTTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGCGCATTGACAT 1461 Query 1427 TGTGGAATTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1486 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 TGTGGAACTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1521 Query 1487 GACCTCACCTTATAGATATGGCTGCCTTGGAGATTTATAGAGATCGGGAGAGAGGAGTTC 1546 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1522 GACCTCACCTTATAGACATGGCTGCCTTGGAGATTTATAGAGACCGGGAGAGAGGAGTTC 1581 Query 1547 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1582 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1641 Query 1607 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1642 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1701 Query 1667 AGCTTGATCTAAACGTGGGATTGCACGCAGAGAAGAAGATCAAAGGATTCGCCATTAGCG 1726 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1702 AGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCG 1761 Query 1727 AAACTGCTTTCTTCATCTTTCTCCTCGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1786 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1762 AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1821 Query 1787 TCACGACGAACTTCAACGAGAAGACGTATACTAAAGAAGGATTAGAGTGGGTCAATACTA 1846 |||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 1822 TCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTA 1881 Query 1847 CAGAGACTTTAAAAGATGTAATAGACAGACACTTCCCAAGCTTAACCGATCAATGGATGC 1906 ||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||| Sbjct 1882 CAGAGACTTTAAAAGATGTGATAGACCGACACTTCCCGAGGTTAACCGATCAATGGATGC 1941 Query 1907 GATGTTCTAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAACACTTGGGTTCCTT 1966 ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1942 GATGTTCGAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAAGAATTGGGTTCCTT 2001 Query 1967 TGTACCTCCGATCCGCTCCATAGGCCAT 1994 |||||||||||||||||||||||||||| Sbjct 2002 TGTACCTCCGATCCGCTCCATAGGCCAT 2029 Score = 750 bits (406), Expect = 0.0 Identities = 437/452 (97%), Gaps = 1/452 (0%) Strand=Plus/Plus Query 1 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 69 Query 61 GATAGGGAGACaaaaaaaaaaTCAAGGCAAAAAATGGGTTTCTCTCCATCTTCTTCATGG 120 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 70 GATAGGGAGACAAAAAAAAA-TCAAGGCAAAAAATGGGTTTCTCTCCATCCTCTTCATGG 128 Query 121 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCGAGATGTCTTACTTTGATGCTTTTTTA 180 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 129 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCAAGATGTCTTACTTTGATGCTTTTTTG 188 Query 181 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGGCTTCCAGTGTTATTA 240 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 189 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGATTTCCAGTGTTATTA 248 Query 241 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTTGTACATGTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 249 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTGGTACATGTC 308 Query 301 GGTCCGATCAACGGTCAGGATTACGACAACGATGAGTTCTGTTATCGTACGGCTGACGGC 360 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 309 GGTCCGATCAACGGTCAGGGTTACGACACCGATGAGTTCTGTTATCGTACGGCTGACGGC 368 Query 361 AAGTGTAATCATCCCTCCGACGACTCCATCGGCAGTCAAGGCAGCTTCATCGGCCGGAAT 420 |||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 369 AAGTGTAACCATCCCTCCGATAACACCATCGGCAGCCAAGGCAGCTTCATCGGCCGGAAT 428 Query 421 ATGCCTCCCTCTACTTCTCAGTACGGCATTTT 452 ||||||||||||||||||||||||||| |||| Sbjct 429 ATGCCTCCCTCTACTTCTCAGTACGGCTTTTT 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99597881280 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5