BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926773 Length=1446 Score E Sequences producing significant alignments: (Bits) Value AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 2278 0.0 AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 1384 0.0 > AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:27799830-27804604 REVERSE LENGTH=1825 Length=1825 Score = 2278 bits (1233), Expect = 0.0 Identities = 1370/1435 (95%), Gaps = 14/1435 (1%) Strand=Plus/Plus Query 6 AGAGAAACAGAAAGACGATGAACTGTGGGAGAGTGTTGAAATCCGCACAAGCCTTGGTGG 65 ||||| | |||||||||||||||||| |||||||||||||||||| |||||||| ||||| Sbjct 113 AGAGAGA-AGAAAGACGATGAACTGTTGGAGAGTGTTGAAATCCGTACAAGCCTCGGTGG 171 Query 66 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGATGCTCAAGCTCGACCACTCCCTGT 125 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | | Sbjct 172 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGGTGCTCAAGCTCGATCACTCCAT-T 230 Query 126 -CTTACTCCTGGTGGGTTGTGTGTTTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGG 184 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 231 ACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGCAAGG 290 Query 185 GGAAGATTCTCTCTTCCTGCTCCAATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCAT 244 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 291 GGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATGTCAT 350 Query 245 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTGCTTCTCTGTGTATACCTCGAG 304 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 351 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTACTCCTCTGTGTATACCTCGAG 410 Query 305 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTGTTTCTCCCTTTATTG 364 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 411 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTATTTCTCCCTTTATTG 470 Query 365 GCATTTGAAGTAATAATACTGGTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGA 424 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 471 GCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGATGCCTGGA 530 Query 425 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 590 Query 485 ATTTCCATGGTGTTCTTTCTGGCTGCTACAGTCTTTACCCT-CTTAAAGCTGTCTGGCGA 543 || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| Sbjct 591 ATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTT-AAGCTGTCTGGCGA 649 Query 544 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGC 603 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 650 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGAGTGCTTTGC 709 Query 604 TTTTCTTGTTTGTACAAAATGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGA 663 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 710 GTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACGTGATAGAGA 769 Query 664 AACCGGGTCATCTTCTTCCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 723 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 AACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 829 Query 724 TTCGGAAGACGATAGGAACCAAGATACAACATGTGGCCTGCAAGACTTTGGTGGTCATAT 783 ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 830 TTCAGAAGACGATAGGAACCAAGAT---ACATGTGGCCTGCAAGACATTGGTGGTCATAT 886 Query 784 AATGAAAATTCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 843 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 AATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 946 Query 844 TGAAGCTGCTAAGTATATACCTGTCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGG 903 |||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||| Sbjct 947 TGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCACTTTTCCTTTTGCAAGG 1006 Query 904 CGTTGGTGTTCTATTTGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGG 963 |||||||||||||||||||||||||||| |||||||||||||||||||| | |||| || Sbjct 1007 CGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCTACTGCTGCGTGG 1066 Query 964 TGAAGATGA-AGCAGGATTATATTTTAGATTTTC-ATCGACAGCCCATGATTGCTTGGGT 1021 |||||||| | ||||||||||||||||| |||| ||| | ||| ||||||||||||||| Sbjct 1067 CGAAGATGATA-CAGGATTATATTTTAGA-TTTCTATCCAGAGCACATGATTGCTTGGGT 1124 Query 1022 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1125 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1184 Query 1082 GAGCAAGCTCGACTATACTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCT 1141 ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1185 GAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTTCTGTGGTCATCCG 1244 Query 1142 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAA 1201 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1245 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGTGTGGAGACTTCAA 1304 Query 1202 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTG 1261 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1305 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTG 1364 Query 1262 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1424 Query 1322 CCATGTAGACACCGAGTCCTCTGCAGAAACTGCTCAGACAAGTGTAAAAAATGTCCTTTC 1381 |||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||| Sbjct 1425 CCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTC 1484 Query 1382 TGCCGTATAAAC-ATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1435 |||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 TGCCGTATAA-CTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1538 > AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:6356131-6360192 REVERSE LENGTH=1815 Length=1815 Score = 1384 bits (749), Expect = 0.0 Identities = 1177/1383 (85%), Gaps = 32/1383 (2%) Strand=Plus/Plus Query 33 GGAGAGTGTTGAAATCCG-CACAAGCCTTGGTGGCTCACT-GCTTT-CTCTTCTCTTTCA 89 |||||||| |||| | || ||||||||||| |||||| | | ||| ||||||| ||||| Sbjct 146 GGAGAGTGCTGAAGT-CGATACAAGCCTTGGCGGCTCA-TAG-TTTACTCTTCTGTTTCA 202 Query 90 CGCTCGCT-TTGATGCTCAAGCTCGACCACTCCCTGTCTTACTCCTGGTGGGTTGTGTGT 148 |||| | ||| |||| || ||||| ||| || | |||| ||| |||||| | |||| | Sbjct 203 CGCT-TTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGGATGGTGTTT 261 Query 149 TTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGGGGAAGATTCTCTCTTCCTGCTCCA 208 || || ||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 262 TTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCT 321 Query 209 ATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCATGCTATTGTCTCAACACCGTTGCTT 268 | || || |||||||||||||||||||| || |||||| ||||| | |||||||| ||| Sbjct 322 GTTGCTCCACGTAACCGTCATTGGGCTCCTTGCCATGCTGTTGTCGCGACACCGTTACTT 381 Query 269 ATAGC-TTTCGAATTGCTTCTCTGTGTATACCTCGAGACTGCATATGCT-GATTCGCCGC 326 |||| ||| ||||| || |||||| |||||||||||| | | |||||| | || ||| | Sbjct 382 GTAGCATTT-GAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGCTCG-TTGGCCAC 439 Query 327 CAGCTGTGAGCTTGAAGATTGTGTTTC-TCCCTTTATTGGCATTTGAAGTAATAATACTG 385 ||||||| || |||||||||| |||| | || || ||||| |||||| ||| ||||||| Sbjct 440 CAGCTGTCAGTTTGAAGATTG-CTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTG 498 Query 386 GTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGAGATGAAGAGAGCGTGAA-TGA 444 || |||||| ||||||||||| ||| ||||||| ||||| || || ||| | || ||| Sbjct 499 GTAGACAATTTGAGAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCAT-AACTGA 557 Query 445 TGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCGATTTCCATGGTGTTC-TTTC 503 ||| ||| ||||||| || |||||||||||||||||||| ||||||||||||||| | Sbjct 558 TGATGCAATATGGGAGGCACTTCCTCATTTCTGGGTTGCAATTTCCATGGTGTTCACGT- 616 Query 504 TGGCTGCTACAG-TCTTTACCCTCTTAAAGCTGTCTGGCGATGTAGCTGCTCTTGGCTGG 562 |||||||||| | ||||||||||| ||||||| |||||||| |||| ||||||||| ||| Sbjct 617 TGGCTGCTAC-GTTCTTTACCCTCCTAAAGCTTTCTGGCGACGTAGTTGCTCTTGGATGG 675 Query 563 TGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGCTTTTCTTGTTTGTACAAAA 622 |||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 676 TGGGATCTATTCATAAATTTTGGAATTGCCGAGTGCTTTGCTTTTCTTGTTTGCACAAAA 735 Query 623 TGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGAAACCGGGTCATCTTCTTCC 682 ||||| ||||||||||| ||||||||||||| || |||||||||||||||||||| || Sbjct 736 TGGTCCAATCCAGTAATCCATAGAAGCTCACGTGCCCGAGAAACCGGGTCATCTTCTACC 795 Query 683 AATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTTTTCGGAAGACGATAGGA-A 741 | ||| |||||||||||||||||||| ||||||| |||| | | ||||| |||| || | Sbjct 796 AGTATCAGATATCTTGACTGGAACAGCGGCCTTGTGGTTGCTCCAGAAGAGGATA-GACA 854 Query 742 CCAAGATACAACATGTGGCCTGCAAGACT-TTGGTGGTCATATAATGAAAATTCCCCTCA 800 |||||||| | || || ||||||| | ||||||||||||| | ||||||||| | | Sbjct 855 CCAAGATAGATGGTGCGGTTTGCAAGA-TATTGGTGGTCATATGTTAAAAATTCCCGTTA 913 Query 801 TTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCCTG-AAGCTGCTAAGTAT 859 || |||||||||| || ||||||||| || ||||||||||||||| ||| |||||| || Sbjct 914 TTTTATTTCAAGTTGTCCTTTGCATGTATTTAGAGGGGACTCCTGAAAG-AGCTAAGGAT 972 Query 860 ATACCTG-TCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGGCGTTGGTGTTCTATT 918 ||| | | |||| || |||||||||||||| ||||||||||||||| | |||||||| || Sbjct 973 ATATC-GATCCCAGTACTGTTTTCTCCACTATTCCTATTGCAAGGCCTCGGTGTTCTCTT 1031 Query 919 TGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGGTGAAGATGAAGCAGG 978 ||||||||||||| | |||||||| | || || ||| | ||||| |||| || | || Sbjct 1032 TGCTGCTTCTAAACTCCTAGAGAAGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGG 1091 Query 979 ATTATATTTTAGATTTTCATCGACAGCCCATGATTGCTTGGGTTTCTTGCACCATGGATC 1038 ||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||| || Sbjct 1092 ATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTC 1151 Query 1039 CAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAGGAGCAAGCTCGACTATA 1098 ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 1152 CAGGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTA 1211 Query 1099 CTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCTCCTGAAATAGTCAAGAA 1158 |||||||||||| |||||||||||||| ||| |||||||||| ||||| ||||||||||| Sbjct 1212 CTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTCATCCGCCTGAGATAGTCAAGAA 1271 Query 1159 AATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1218 |||||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1272 AATGCCAAAGGAAGATCTTGCAGAAGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1331 Query 1219 AACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTGCAAAATGAGAAAGTGCT 1278 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1332 AACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATGAGAAAGTGCT 1391 Query 1279 GTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTG-TACTGCTTCCATGTAGACACCGAG 1337 ||||||||| || ||||||| ||| |||||| ||| |||||||||||||||||||||| | Sbjct 1392 GTGTAGGGTTTGCTTTGAAAAAGATATCAGT-TTGGTACTGCTTCCATGTAGACACCGTG 1450 Query 1338 TCCTCTGCAGAAACTGCT-CAGACAAGTGTAAAAAATGTCCTTTCTGCCGTATAAACATC 1396 | |||||||||| ||| | |||||||||||| || |||||| | || |||||| |||| Sbjct 1451 TTCTCTGCAGAACCTG-TGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATT 1509 Query 1397 GAA 1399 ||| Sbjct 1510 GAA 1512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71284773900 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5