BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926871 Length=1461 Score E Sequences producing significant alignments: (Bits) Value AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family ... 2444 0.0 AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) s... 150 3e-35 > AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28135361-28138768 REVERSE LENGTH=1969 Length=1969 Score = 2444 bits (1323), Expect = 0.0 Identities = 1418/1464 (97%), Gaps = 5/1464 (0%) Strand=Plus/Plus Query 2 AAAA-ATCTGAGCTTTGAAAATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 60 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 293 AAAAGATCTGAGCTTTGAACATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 352 Query 61 TGGTCGGTGGTCCAACCAAAGGTACTCGGTTTCGGCCATTGTCGCTGAATATTCCAAAGC 120 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 353 TGGTCGGTGGTCCAACCAAAGGCACTCGATTTCGGCCATTGTCGCTGAATATTCCAAAGC 412 Query 121 CTCTGTTTCCTATTGCGGGACAGCCAATGGTGCATCATCCTATTTCAGCTTGTAAAAGAA 180 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 413 CTCTGTTTCCTATTGCGGGACAACCAATGGTGCATCATCCAATTTCAGCTTGTAAAAGAA 472 Query 181 TTCCAAATTTAGCACAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 240 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TTCCAAATTTAGCTCAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 532 Query 241 ATGTCTCAGCCATCTCTAATGAACTCAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 300 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 533 ATGTTTCAGCCATCTCTAATGAACTTAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 592 Query 301 CACATGGTTCAGCTGGTGGGCTCTATCACTTTAGAAATCTTATTATGGAAGATAGCCCGT 360 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 593 CACATGGTTCAGCTGGTGGGCTGTATCACTTTAGAAATCTTATTATGGAAGATAGTCCGT 652 Query 361 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCTTTGCCCGAAATGCTCG 420 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 653 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCCTTGCCCAAAATGCTCG 712 Query 421 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 772 Query 481 CAGCCAGCCAATTTGGAGAATTGGTAGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 773 CAGCCAGCCAATTTGGAGAATTGGTTGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 832 Query 541 CCGAGAAACCCGAAACTTTTGTCAGTGATCGTATTAACTGTGGTGTTTATGTATTTACAC 600 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 833 CCGAGAAACCCGAAACTTTTGTCAGTGATCGAATTAACTGTGGTGTTTATGTATTTACAC 892 Query 601 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 952 Query 661 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 1012 Query 721 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACAGCTATATACTTATGAGA 780 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1013 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACGGCTATATACTTATGAGA 1072 Query 781 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGAATGTCTTTGAGGTGTTCGGGACTCT 840 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 1073 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGGATGTCGTTGAGGTGTTCAGGACTCT 1132 Query 841 ATCTTTCCCAATTCCGCTTGACCTCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 900 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1133 ATCTTTCCCAATTCCGCTTGACATCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 1192 Query 901 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTACACCCAACTGCAA 960 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1193 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTTCACCCAACTGCAA 1252 Query 961 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1312 Query 1021 TCAGCTGTATCATCCTTGATGACGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1080 | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1313 TGAGCTGCATCATCCTTGACGATGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1372 Query 1081 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGTGTCCAGGCTGAGGGAGTTTACA 1140 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1373 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGCGTCCAGGCTGAGGGAGTCTACA 1432 Query 1141 ATTCCAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGATGAGGTTGTGG 1200 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1433 ATTCGAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGACGAGGTTGTGG 1492 Query 1201 TGACCAGCTGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1260 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 TGACCAGCAGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1552 Query 1261 TTTTGTAATTGAAAAATGGAACATGAAAAATGGAACCAACCCAGTGGGGAGC--C-ACAC 1317 |||||||| ||||||| |||| ||||||||||||||||||||||||||||| | |||| Sbjct 1553 TTTTGTAACTGAAAAACGGAAGTTGAAAAATGGAACCAACCCAGTGGGGAGCAGCCACAC 1612 Query 1318 CATCTCTCTCTGATTCAATATCTACTGGAGAATCACAGAAGCATATATTTGGGAACTAAT 1377 ||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 1613 TATCTCCCTCTGATTCAATATCTACTGGAGAACCACATAAGCAAATATTTGGGAACTAAT 1672 Query 1378 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATTTCATCTTCTA 1437 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 1673 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATTCCATTTTCTA 1732 Query 1438 TACTCACAATCACAGCTACTGTAA 1461 ||||||||| |||||||||||||| Sbjct 1733 TACTCACAA-CACAGCTACTGTAA 1755 > AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135667 FORWARD LENGTH=1648 Length=1648 Score = 150 bits (81), Expect = 3e-35 Identities = 90/94 (96%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 1368 GGGAACTAATTCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATT 1427 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1648 GGGAACTAATTCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATT 1589 Query 1428 TCATCTTCTATACTCACAATCACAGCTACTGTAA 1461 ||| |||||||||||||| |||||||||||||| Sbjct 1588 CCATTTTCTATACTCACAA-CACAGCTACTGTAA 1556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72037782075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5