BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926875
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74940.1 | Symbols: | Protein of unknown function (DUF581) ... 1059 0.0
AT1G19200.1 | Symbols: | Protein of unknown function (DUF581) ... 117 2e-25
> AT1G74940.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:28146059-28147378 FORWARD LENGTH=1207
Length=1207
Score = 1059 bits (573), Expect = 0.0
Identities = 663/705 (94%), Gaps = 11/705 (2%)
Strand=Plus/Plus
Query 12 TTCTTGATTATGATTCTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 71
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TTCTTGATTATGATACTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 276
Query 72 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCGAGTCCGAGA 131
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 277 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCCAGTCCGAGA 336
Query 132 AGTCCCTTGGATTTGAACTTCCCGTCGCCGGTTAACTCGAAGCGGTTCGGTTCCGGTGGT 191
||||| ||||||||||||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 337 AGTCCGTTGGATTTGAACTTCCCCTCCCCGGTTCACTCGAAGCGGTTCGGTTCTGGTGGT 396
Query 192 GTCGGTTTGGGTATTGTAGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCACGAT 251
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 GTCGGTTTGGGTATTGTTGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCATGAT 456
Query 252 CCGGTTCGTTACTCTGGGAGATTCCGGTGTCCCG-AGATTGATCTGTCGGATGAGGAGGA 310
|||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |
Sbjct 457 CCGGTTCGTTACTCCGGGAGATTCAGGTG-CCCGGAGATTGATCTGTCGGATGAGGA--A 513
Query 311 ATACACTTATGTCACGAGCCCAAACGGACCGACTAAAGTGTATTACAACGACGACGGGTT 370
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 514 -TACACTTATGTTACGAGCCCAAACGGGCCGACCAAAGTGTATTACAACGACGACGGGTT 572
Query 371 TGAATTGTGTGAAAATGATTATCGGAGAGTGCATAAACCGATGGTTATTGTCGATGAACC 430
|||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 573 TGAATTGTCTGAAAATGATTATCGGAGAGTTCATAAACCGATGGTTACCGTCGATGAACC 632
Query 431 ACCGGTTATTAAAAGACAGAGT-TATAGGGATCCGACTGAGTTTCTGAGTTCGTGTTGCT 489
|||||||||| ||||||||||| | ||||| ||| || ||||||||||||||||||||||
Sbjct 633 ACCGGTTATTGAAAGACAGAGTGT-TAGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCT 691
Query 490 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 751
Query 550 GTAGTGCTGAATGCAGATCAGTGCAAATAATGAATGACGAACGAAAAGAGCAATGTAAGA 609
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 752 GTAGTGCCGAATGCAGATCAGTGCAAATAATGAATGACGAACGACAAGAGCAATGTAAAA 811
Query 610 CGCAGGTTTCAAGAAACGTCGACGTTTCGACCTCTCCTTGCGCCGCCGGACAGACG-TTA 668
|||| ||||||||||||| |||||||| || |||||||| |||||||||||||| | |||
Sbjct 812 CGCAAGTTTCAAGAAACGCCGACGTTTTGAGCTCTCCTTACGCCGCCGGACAGA-GATTA 870
Query 669 TCTGCCGG-GATATTCGTATTTTAGGATCATCACAATTCACAATA 712
|||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 871 TCTGCCGGAG-TATTCGTATTTTAGGATGATCACAATTCACAATA 914
> AT1G19200.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:6625020-6625856 REVERSE LENGTH=732
Length=732
Score = 117 bits (63), Expect = 2e-25
Identities = 78/85 (92%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 471 TTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTAC 530
||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 448 TTTCTAACTTCTTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATTTACATGTAC 507
Query 531 AAAGGAGA-GATGGGATTTTGTAGT 554
|||||||| || || ||||||||||
Sbjct 508 AAAGGAGATGAAGG-ATTTTGTAGT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5