BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926916

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 | chr1:2...   706    0.0  


> AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 | chr1:28272071-28272832 
FORWARD LENGTH=672
Length=672

 Score =  706 bits (382),  Expect = 0.0
 Identities = 430/453 (95%), Gaps = 4/453 (1%)
 Strand=Plus/Plus

Query  12   GAAGGCGAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAATCCATGTGTTC  71
            |||| | |||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  83   GAAGAC-AAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTC  141

Query  72   CTTCTCTGGAATTGAGAAAGCCGGTTATGGCGGCAGTGAAAGGAGGAAAACAATCGGCGA  131
            |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  142  CTTCTCTGCAATTAAGAAAGCCGGTGATGGCGGCAGTGAAAGGAGGAAAACAATCGGTGA  201

Query  132  GAAGAAGCAGCAATACGGTGGTTCAAATAACGTGTCGTAAGAAGGATTTGCATCCAGAAT  191
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct  202  GAAGAAGCAGCAATACGGTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAAT  261

Query  192  TCCACGAAGACGCGAAGGTATACTGCAATGGAGAGCTGGTGATGACGACGGGAGGAACAA  251
            ||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct  262  TCCACGAAGACGCAAAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAA  321

Query  252  AGAAGGAGTATGTGGTTGATGTTTGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT  311
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  322  AGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT  381

Query  312  CGGCTTTGATGGTTGATGCTGATCAAGTGGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT  371
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  382  CGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT  441

Query  372  CTGAGATTATGGAGATTCCGGTGCTTAAAGGAGAAATCGTTATGCCTACTAAGAAAAGTA  431
            ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  442  CTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTATGCCTACTAAGAAAAGTA  501

Query  432  AAGGTCCTGGCAAAGGGAAGAAGAAATGATGAG  464
            |||||||   |||||||||||||||||||||||
Sbjct  502  AAGGTCC---CAAAGGGAAGAAGAAATGATGAG  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5