BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926916 Length=481 Score E Sequences producing significant alignments: (Bits) Value AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 | chr1:2... 706 0.0 > AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 | chr1:28272071-28272832 FORWARD LENGTH=672 Length=672 Score = 706 bits (382), Expect = 0.0 Identities = 430/453 (95%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 12 GAAGGCGAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAATCCATGTGTTC 71 |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 83 GAAGAC-AAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTC 141 Query 72 CTTCTCTGGAATTGAGAAAGCCGGTTATGGCGGCAGTGAAAGGAGGAAAACAATCGGCGA 131 |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 142 CTTCTCTGCAATTAAGAAAGCCGGTGATGGCGGCAGTGAAAGGAGGAAAACAATCGGTGA 201 Query 132 GAAGAAGCAGCAATACGGTGGTTCAAATAACGTGTCGTAAGAAGGATTTGCATCCAGAAT 191 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 202 GAAGAAGCAGCAATACGGTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAAT 261 Query 192 TCCACGAAGACGCGAAGGTATACTGCAATGGAGAGCTGGTGATGACGACGGGAGGAACAA 251 ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||| Sbjct 262 TCCACGAAGACGCAAAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAA 321 Query 252 AGAAGGAGTATGTGGTTGATGTTTGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT 311 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 322 AGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT 381 Query 312 CGGCTTTGATGGTTGATGCTGATCAAGTGGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT 371 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 382 CGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT 441 Query 372 CTGAGATTATGGAGATTCCGGTGCTTAAAGGAGAAATCGTTATGCCTACTAAGAAAAGTA 431 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 442 CTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTATGCCTACTAAGAAAAGTA 501 Query 432 AAGGTCCTGGCAAAGGGAAGAAGAAATGATGAG 464 ||||||| ||||||||||||||||||||||| Sbjct 502 AAGGTCC---CAAAGGGAAGAAGAAATGATGAG 531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22906771032 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5