BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927000
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76100.1 | Symbols: PETE1 | plastocyanin 1 | chr1:28553987-2... 769 0.0
> AT1G76100.1 | Symbols: PETE1 | plastocyanin 1 | chr1:28553987-28554768
REVERSE LENGTH=782
Length=782
Score = 769 bits (416), Expect = 0.0
Identities = 509/554 (92%), Gaps = 5/554 (1%)
Strand=Plus/Plus
Query 5 CCCAAAAAATAAAGAAAATGGTCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTAA 64
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 20 CCCAAAAAGTAAAGAAAATGGCCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTCA 79
Query 65 CCGGCCTCAAGCTCGCCGTCAGCTCAAAACCTACGACATTATCCACCACCATTAGATCCT 124
||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 80 CCGGCCTAAAGCTCGCCGTCAGCTCAAAACCTAAGACATTATCCACCATCAGTAGATCCA 139
Query 125 CCTCCGCTACCAGGACGGCACCTAAGCTCTCTGTGAAGTCCTCTTTGAAGGATTTCGGCG 184
| ||||| |||||| || ||||||||||| || ||||||||||||||||||||||||| |
Sbjct 140 CTTCCGCCACCAGGGCGCCACCTAAGCTCGCTTTGAAGTCCTCTTTGAAGGATTTCGGTG 199
Query 185 TCATCGCCGTTGCAACAGCAGCTTCGATTGTTTTAGCCGGAAATGCAATGGCCATGGAGG 244
||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 200 TCATCGCAGTGGCAACAGCAGCTTCGATCGTTTTAGCTGGAAATGCGATGGCCATGGAGG 259
Query 245 TTCTTCTAGGATCCGACGATGGTTCTCTTGTTTTCGTACCATCTGAATTCACAGTGGCTA 304
||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct 260 TTCTTTTAGGATCCGACGACGGTTCCCTTGCTTTCGTACCATCTGAATTCACGGTGGCTA 319
Query 305 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACACAATGTTGTGTTCGACG 364
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 320 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACATAACGTGGTGTTCGACG 379
Query 365 AAGACGAGATCCCTAGTGGTGTGGACGCGACCAAGATCTCGATGGACGAGACAGAGCTTC 424
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||
Sbjct 380 AAGACGAGATCCCTAGTGGTGTGGACGCAAGCAAGATCTCGATGGATGAGACAGCGCTTC 439
Query 425 TTAATGGTGC-GGGAGAGAGTTACGAGGTTACTTTGACAGAGCCTGGCTCTTACAGTTTC 483
| |||||||| ||| |||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 440 TAAATGGTGCAGGG-GAGACTTACGAGGTTACTTTGACAGAGCCAGGCTCTTACGGTTTC 498
Query 484 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTCGGGAAACTCACCGTCAAGTAGTAAATT 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 499 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTTGGGAAACTCACCGTCAAGTA--AA-TT 555
Query 544 GTCTCGAGAATCTC 557
|||| || | ||||
Sbjct 556 GTCTAGATATTCTC 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724566204
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5