BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927009

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76180.1 | Symbols: ERD14 | Dehydrin family protein | chr1:2...   514    4e-145


> AT1G76180.1 | Symbols: ERD14 | Dehydrin family protein | chr1:28586773-28587877 
REVERSE LENGTH=1018
Length=1018

 Score =  514 bits (278),  Expect = 4e-145
 Identities = 362/401 (90%), Gaps = 12/401 (3%)
 Strand=Plus/Plus

Query  7    tttttCTGATAACTATGGCGGAGGAAATCAAGAACGTTCCTGAGCAGAAGGTGCCAAAGG  66
            |||||| |||||||||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct  207  TTTTTCCGATAACTATGGCTGAGGAAATCAAGAATGTTCCTGAACAGGAGGTGCCAAAGG  266

Query  67   TAGCGACAGAGGAATCATCATCGGCTGAGGTTACAGATCGTGGATTGTTCGATTTCTTGG  126
            |||| ||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  267  TAGCAACAGAGG-A--ATCATCGGCAGAGGTTACAGATCGTGGATTGTTCGATTTCTTGG  323

Query  127  GAAAGAAGAAGGGCGAAACAAAACCCGAGGAAACGACGATCGATTCAGAGTTTGAGCAGA  186
            |||||||||| | |||||||||||| ||||| ||  |||||| |||||||||||||||||
Sbjct  324  GAAAGAAGAAAGACGAAACAAAACCAGAGGAGACTCCGATCGCTTCAGAGTTTGAGCAGA  383

Query  187  AGGTTCATATTTCGGAGCCGGAGCCGGCGCCAGAGGTTAAACACGAAAGTCTCCTTGAGA  246
            ||||||||||||| |||||||||||      ||||||||||||||||||||| ||||| |
Sbjct  384  AGGTTCATATTTCAGAGCCGGAGCC------AGAGGTTAAACACGAAAGTCTTCTTGAAA  437

Query  247  AGCTTCACCGAAGCGACAGTTCTTCTAGCTCCTCTAGTgaggaagaaggtgaagatggtg  306
            |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||
Sbjct  438  AGCTTCACCGAAGCGACAGTTCTTCTAGCTCCTCAAGTGAGGAAGAAGGTTCAGATGGTG  497

Query  307  agaagaggaagaagaaaaaggagaagaagaagccagttgctgaagtagaggtgaaaacag  366
            |||||||||||||||| ||||||||||||||||||  | ||||||| ||||| |||   |
Sbjct  498  AGAAGAGGAAGAAGAAGAAGGAGAAGAAGAAGCCAACTACTGAAGTTGAGGT-AAAG--G  554

Query  367  aggaagagaagaaaggGTTTATGGAGAAGTTGAAGGAGAAG  407
            |||||||||||||||||||||||||||||||||| ||||||
Sbjct  555  AGGAAGAGAAGAAAGGGTTTATGGAGAAGTTGAAAGAGAAG  595


 Score =  189 bits (102),  Expect = 2e-47
 Identities = 124/135 (92%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  420  GTGGAGGAAGCGCATCCGGCGGAAAAGAAAGGGATTCTTGAGAAGATTAAGGAGAAGCTT  479
            ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct  665  GTGGAAGAAGCGCATCCAGTGGAGAAGAAAGGGATTCTTGAGAAGATTAAGGAGAAGCTT  724

Query  480  CCAGGATACCACCCCAAGACCACCGTAGAGGAGGAGAAGAAGGACAAAGAATAAGAAAAA  539
            |||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | 
Sbjct  725  CCAGGATACCACCCTAAGACCACCGTAGAGGAGGAGAAGAAAGATAAAGAATAAGAAGAT  784

Query  540  TATGATTAAAAATAT  554
            ||| |||||| ||||
Sbjct  785  TATCATTAAAGATAT  799



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26573863763


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5