BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927108 Length=821 Score E Sequences producing significant alignments: (Bits) Value AT1G77090.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 1031 0.0 > AT1G77090.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:28960387-28961922 REVERSE LENGTH=1019 Length=1019 Score = 1031 bits (558), Expect = 0.0 Identities = 636/674 (94%), Gaps = 3/674 (0%) Strand=Plus/Plus Query 122 AGACGAGAGGTGCGCTACGGCTTTGAGTAGAAGATCGGTACTGGCGTCTGGATTCTCTTT 181 ||||||| |||| |||| || ||||||||||||||||||| ||||||| || || | | Sbjct 161 AGACGAGTGGTGTGCTAGGGTTTTGAGTAGAAGATCGGTAATGGCGTCAGGGTT-GGTCT 219 Query 182 AGTCTCGTCGACGTCTTTAATGTTTCCAGGGGAAGGATTGGCTGTCGTGAAACAGGGTCT 241 |||| ||||| ||||| |||||| ||||||||||||||||||| ||||| ||||| Sbjct 220 --CCTCGACGACGGCTTTAGCATTTCCAAGGGAAGGATTGGCTGTCGTTAAACAAGGTCT 277 Query 242 TCTTGCCGGGAGAGTTCCTGGTCTATCCGAACCTGATGATGAAGGTTGGAGAACATACCG 301 ||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 278 TCTCGCTGGGAGAGTTCCTGGTCTGTCCGAACCTGATGAAGAAGGTTGGAGAACATACCG 337 Query 302 TAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGC 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGC 397 Query 362 CTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCCATCGCTGATCTTGGTGGCAC 421 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 398 CTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCGATCGCTGATCTTGGTGGCAC 457 Query 422 CGAGATTGACTTGCGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCC 481 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 458 CGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCC 517 Query 482 TGTTCTAAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACCACC 541 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 518 TGTTCTTAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACAACC 577 Query 542 AGCGAAGGTGATCAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTTGAAGGGAAGGT 601 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 578 AGCGAAGGTGATTAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTAGAAGGGAAGGT 637 Query 602 GTTAAGTTCCAATGTTTCAGAACACGAAGGTAGACTCTATTACCAATTTGAGCTAGAGCC 661 |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct 638 GTTAAGTTCCAATGTTGCAGAACACGATGGTAGACTCTATTACCAATTCGAGCTAGAGCC 697 Query 662 ACCTCATGTACTGATCACAGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCAC 721 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 698 GCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCAC 757 Query 722 CGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATT 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 CGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATT 817 Query 782 CCGCATTGTTTAGA 795 |||||||||||||| Sbjct 818 CCGCATTGTTTAGA 831 Score = 84.2 bits (45), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 2 TTCTCGAA-GTCGCCGGACAAACATGGAAACAGCTCTGCTCCGGTACTGCGTCAATTTTT 60 |||||||| |||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 28 TTCTCGAACTTCGCCGGAGAATGATGGAAACAGCTCTGCTCCGGTACTGCGTCAACTTTT 87 Query 61 CCAGTCA 67 || |||| Sbjct 88 CCGGTCA 94 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39986381012 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5