BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927173

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ubiquitin...   512    7e-145


> AT1G77710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, 
Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 
proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa 
- 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes 
- 48 (source: NCBI BLink). | chr1:29206635-29208145 FORWARD 
LENGTH=647
Length=647

 Score =  512 bits (277),  Expect = 7e-145
 Identities = 312/328 (95%), Gaps = 5/328 (2%)
 Strand=Plus/Plus

Query  1    TCTCCTCCGTCGTCGGGAAAAATGGCCACTGGTGGAGGAAAAGTCTCCTTCAAAGTCACT  60
            ||||||||  |||||| ||||||||||||||||   ||||||||||||||||||||||||
Sbjct  95   TCTCCTCCCCCGTCGGAAAAAATGGCCACTGGT---GGAAAAGTCTCCTTCAAAGTCACT  151

Query  61   CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTCCCAGAAGGAGCTCCATTC  120
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  152  CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTACCAGAAGGAGCTCCGTTC  211

Query  121  ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC  271

Query  181  ATCACTAATGATGGGATTGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  ATCACTAATGATGGGATCGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG  331

Query  241  CACGGATCTGAACTCAGACTGATCCCGCGTGATAGAGTTGGAGCTGCGTTTGTGATGGAT  300
            |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct  332  CACGGATCTGAACTAAGATTGATCCCGCGTGATAGAGTTGGAGCTGTGTTTGTGATGGAT  391

Query  301  CCATAAATG-T-TGTAAGCAATGAGTAA  326
            ||||| ||| | |||||||||||| |||
Sbjct  392  CCATAGATGATGTGTAAGCAATGATTAA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5