BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927173 Length=326 Score E Sequences producing significant alignments: (Bits) Value AT1G77710.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin... 512 7e-145 > AT1G77710.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206635-29208145 FORWARD LENGTH=647 Length=647 Score = 512 bits (277), Expect = 7e-145 Identities = 312/328 (95%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 1 TCTCCTCCGTCGTCGGGAAAAATGGCCACTGGTGGAGGAAAAGTCTCCTTCAAAGTCACT 60 |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 95 TCTCCTCCCCCGTCGGAAAAAATGGCCACTGGT---GGAAAAGTCTCCTTCAAAGTCACT 151 Query 61 CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTCCCAGAAGGAGCTCCATTC 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 152 CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTACCAGAAGGAGCTCCGTTC 211 Query 121 ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC 271 Query 181 ATCACTAATGATGGGATTGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 272 ATCACTAATGATGGGATCGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG 331 Query 241 CACGGATCTGAACTCAGACTGATCCCGCGTGATAGAGTTGGAGCTGCGTTTGTGATGGAT 300 |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 332 CACGGATCTGAACTAAGATTGATCCCGCGTGATAGAGTTGGAGCTGTGTTTGTGATGGAT 391 Query 301 CCATAAATG-T-TGTAAGCAATGAGTAA 326 ||||| ||| | |||||||||||| ||| Sbjct 392 CCATAGATGATGTGTAAGCAATGATTAA 419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15180860198 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5