BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927178
Length=2803
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77760.1 | Symbols: NIA1, GNR1, NR1 | nitrate reductase 1 | ... 4364 0.0
> AT1G77760.1 | Symbols: NIA1, GNR1, NR1 | nitrate reductase 1
| chr1:29235803-29239445 REVERSE LENGTH=3034
Length=3034
Score = 4364 bits (2363), Expect = 0.0
Identities = 2666/2811 (95%), Gaps = 25/2811 (1%)
Strand=Plus/Plus
Query 1 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTATCCCCGCCTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 59 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTAT------C-C- 110
Query 61 ACACCGCCATGAACGGCGTCGTTCACGCTTTCAAACCTCCTCTCGTTCCTTCTCCCCGCT 120
|| ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct 111 -CA---CCATGAACGGCGTCGCTCACGCCTTCAAACCTCCTCTCGTTCCTTCTCCTCGCT 166
Query 121 CATTCGACCGCCACCGTCACCAAAACCAGTCTCTCGACG---TCGTCACCG-AA--AAAA 174
|||||||||||||||||||||||||||| ||||||||| || |||||| || ||||
Sbjct 167 CATTCGACCGCCACCGTCACCAAAACCAAACTCTCGACGTCATCCTCACCGAAACTAAAA 226
Query 175 TCGTCAAAGAAACCGAAGTCATCACCACCACCGTCGCAGACAGTTACGACGACTCTTCCA 234
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
Sbjct 227 TCGTCAAAGAAACCGAAGTCAT---CACCACCGTCGTAGACAGTTACGACGACTCCTCAA 283
Query 235 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCATACTACAAAGAGCTGGTTAAAA 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 284 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCTTACTACAAAGAGCTGGTTAAAA 343
Query 295 AATCCAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACTGCTGATA 354
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 344 AATCAAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACGGCTGATA 403
Query 355 GTTGGATCCAACGTAACTCCTCCATGATCCGTCTCACCGGAAAACATCCATTCAACGCCG 414
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 404 GTTGGATTCAACGTAACTCATCCATGCTCCGTCTCACCGGAAAACATCCATTCAACGCCG 463
Query 415 AAGCACCTCTCCCTCGTCTTATGCACCATGGATTCATCACTCCAGTCCCACTCCATTACG 474
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 464 AAGCACCTCTTCCTCGTCTTATGCACCATGGATTCATCACTCCAGTTCCACTCCATTACG 523
Query 475 TCCGCAACCACGGCGCAGTTCCCAAAGCGAATTGGTCCGATTGGTCAATCGAAATCACCG 534
||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 524 TCCGCAACCACGGTGCAGTTCCCAAAGCGAATTGGTCAGACTGGTCAATCGAAATTACCG 583
Query 535 GACTCGTCAAACGTCCGGCGAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 594
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GACTCGTTAAACGTCCGGCTAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 643
Query 595 GCGAATTCCCGGTAACACTCGTCTGCGCCGGTAACCGCCGCAAGGAACAGAACATGGTGA 654
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 644 GCGAATTCCCGGTGACACTCGTCTGCGCCGGTAATCGCCGCAAGGAACAGAACATGGTGA 703
Query 655 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGCATCAACTTCTCTCTGGAAAGGTG 714
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 704 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGTATCTACTTCTCTATGGAAAGGTA 763
Query 715 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGCGGCGCGTTAA 774
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 764 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGAGGCGCGTTAA 823
Query 775 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCGAAATACGGAACAA 834
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 824 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCTAAATACGGAACAA 883
Query 835 GTATTAAGAAAGAGATGGCTATGGATCCTGCTAGAGATATTATATTAGCTTATATGCAAA 894
|||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 884 GTATTAAGAAGGAGATGGCGATGGATCCGGCTAGAGATATTATCTTAGCTTATATGCAAA 943
Query 895 ACGGTGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCCGGTTTTA 954
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 944 ACGGCGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCGGGTTTCA 1003
Query 955 TCGGTGGCCGGATGGTTAAATGGTTAAAGCGAATCATCGTCACGCCTCAAGAATCTGACA 1014
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1004 TCGGTGGTCGGATGGTTAAATGGTTAAAGAGAATCATCGTCACGCCTCAAGAATCTGACA 1063
Query 1015 ATTACTATCACTACAAAGACAATCGAGTCCTTCCTTCTCTTGTTGATGCTGAGCTGGCAA 1074
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1064 GTTACTATCACTATAAAGACAATCGAGTCCTTCCTTCTCTCGTTGATGCTGAGCTGGCAA 1123
Query 1075 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATGTAAACTCGG 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1124 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATATAAACTCGG 1183
Query 1135 TGATTACAACACCTGGTCACGAAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1194
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGATTACAACACCTGGTCACGCAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1243
Query 1195 CGTACACATTAAAAGGCTACGCTTACTCTGGAGGAGGTAAGAAGGTAACGAGAGTTGAGG 1254
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1244 CGTACACATTAAAAGGCTACGCTTATTCTGGAGGAGGTAAGAAGGTAACGAGGGTTGAGG 1303
Query 1255 TGACTCTAGATGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAAGAGAAACCGA 1314
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1304 TGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGA 1363
Query 1315 ACAAGTACGGCAAGTTCTGGTGCTGGTGTTTCTGGTCACTAGACGTTGAGGTTCTTGATC 1374
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1364 ACAAGTACGGTAAATTCTGGTGCTGGTGTTTCTGGTCACTTGACGTTGAGGTTCTTGATC 1423
Query 1375 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTGAACACCCAGCCTG 1434
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1424 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTCAATACTCAGCCTG 1483
Query 1435 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGAACCA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1484 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGGACCA 1543
Query 1495 ACGTGTGCAAGCCTAATAGAGGAGAGATAGGGATAGTTTTCGAACATCCGACCCGACCCG 1554
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1544 ACGTGTGCAAGCCTCATAGAGGAGAGATAGGGATAGTTTTCGAACACCCGACCAGACCCG 1603
Query 1555 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAACGTCAGCTTGAGATTTCCTCTGAATCCA 1614
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1604 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAGCGTCAGCTTGAGATTTCCTCAGAATCCA 1663
Query 1615 ACCAA-ACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCAAAGATGTAT 1673
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1664 A-CAATACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCGAAGATGTAT 1722
Query 1674 TCAATGTCCGAAGTTAGAAAACACAACTCTGCTGACTCTGCATGGATCATCGTCCACGGT 1733
||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1723 TCAATCTCTGAAGTTAGAAAACACAACACTGCTGACTCTGCATGGATCATCGTCCACGGT 1782
Query 1734 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTC 1793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTG 1842
Query 1794 ATTAACGCAGGAACAGATTGCACCGAAGAGTTTGAAGCTATTCATTCTGACAAAGCCAAG 1853
|| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1843 ATAAACGCAGGTACAGATTGCACCGAAGAGTTTGAAGCCATTCACTCTGACAAAGCCAAG 1902
Query 1854 AAGCTTTTAGAAGATTACCGTATCGGTGAACTCATCACTACTGGCTACGACTCTTCCCCT 1913
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1903 AAGCTTTTGGAAGATTACCGTATCGGTGAACTCATCACCACTGGCTACGACTCTTCCCCT 1962
Query 1914 AACGTCTCAGTCCATGGTGCCTCAAACTTAGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 1973
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1963 AACGTCTCAGTTCATGGTGCCTCAAACTTTGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 2022
Query 1974 GCTCCTCAAAAGAACATTGCTTTGGTTAACCCACGTGAGAAAATCCCGGTTAGACTCATC 2033
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2023 ACTCCTCAAAAGAACATTGCTTTGGTCAACCCACGTGAGAAAATCCCGGTTAGGCTCATT 2082
Query 2034 GAGAAGACTTCGATCTCTCACGACGTTCGTAGGTTCAGATTCGCATTACCGGT-AGAAGA 2092
||||||||||||||||| ||||||||||||| |||| ||||||||||||| | ||||||
Sbjct 2083 GAGAAGACTTCGATCTCGCACGACGTTCGTAAGTTCCGATTCGCATTACCA-TCAGAAGA 2141
Query 2093 TCAACAGCTTGGTTTACCTGTGGGGAAGCACGTTTTCGTCTGCGCCAATATAAACGACAA 2152
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 2142 TCAACAGCTTGGTTTACCCGTGGGGAAGCACGTTTTCGTTTGCGCCAACATAAACGACAA 2201
Query 2153 ACTCTGTCTCAGAGCTTATACTCCAACTAGCGCCATCGACGCCATTGGTCATATCGACCT 2212
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 2202 ACTCTGTCTCAGAGCTTATACTCCCACCAGCGCCATCGACGCGGTTGGTCATATCGACCT 2261
Query 2213 AGTCGTCAAAGTTTACTTCAAAGACGTCCATCCAAGGTTTCCCAATGGAGGACTCATGTC 2272
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2262 CGTCGTCAAAGTTTACTTCAAAGACGTTCATCCAAGGTTTCCCAATGGTGGACTCATGTC 2321
Query 2273 ACAACACTTAGACTCGTTACCAATCGGGTCAATGATAGACATCAAAGGTCCATTAGGACA 2332
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 2322 TCAACACTTAGACTCGTTACCAATCGGGTCAATGATAGATATCAAAGGTCCACTAGGGCA 2381
Query 2333 CATCGAGTACAAAGGTAGAGGCAACTTCTTGGTCAGCGGCAAACCCAAGTTTGCTAAGAA 2392
||||||||||||||| | |||||||||| |||||||||||||||| |||||||| |||||
Sbjct 2382 CATCGAGTACAAAGGCAAAGGCAACTTCCTGGTCAGCGGCAAACCTAAGTTTGCCAAGAA 2441
Query 2393 ACTAGCCATGCTCGCCGGAGGAACAGGCATTACTCCGATATACCAGATCATTCAATCTAT 2452
|||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2442 ACTAGCAATGCTCGCCGGAGGAACAGGCATCACTCCTATCTACCAGATCATTCAATCTAT 2501
Query 2453 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2561
Query 2513 TGACATACTCGTGAGGGAGGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2572
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 TGACATTCTTGTGAGGGAAGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2621
Query 2573 GATTTGGTACGTCGTTGAAATCGCAAAAGAAGGTTGGAACTACAGTACCGGGTTTATTAC 2632
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 2622 GATTTGGTACGTCGTTGAAATCGCAAAGGAAGGTTGGAGTTACAGTACCGGGTTTATAAC 2681
Query 2633 CGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCCCTCGCACTCGC 2692
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2682 TGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCGCTAGCACTCGC 2741
Query 2693 ATGCGGACCACCGCCTATGATTCAGTTCGCGTTGCAGCCGAATCTAGAGAAGATGGGTTA 2752
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2742 ATGCGGACCACCGCCTATGATTCAGTTTGCGTTGCAGCCAAATCTAGAGAAGATGGGTTA 2801
Query 2753 CAACGTGAAGGAGGATCTCTTGATCTTCTAGATTTGCTCAAGTTATATGCT 2803
||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 2802 CAACGTGAAGGAGGATCTCTTAATCTTCTAGATTTGCTCAAGTTCTGTGCT 2852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139263433768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5