BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927187 Length=1762 Score E Sequences producing significant alignments: (Bits) Value AT1G77850.1 | Symbols: ARF17 | auxin response factor 17 | chr1:... 2368 0.0 AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -relate... 556 2e-157 > AT1G77850.1 | Symbols: ARF17 | auxin response factor 17 | chr1:29272313-29275419 FORWARD LENGTH=2076 Length=2076 Score = 2368 bits (1282), Expect = 0.0 Identities = 1586/1732 (92%), Gaps = 23/1732 (1%) Strand=Plus/Plus Query 1 GTTTACAGTGATAACAGATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 60 ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 GTTTACACTGAAAACAAATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 129 Query 61 ACCGTCAAGTCGACCCAAGGATCTGGCGCGCTTGTGCTGGTGCCTCCGTTCAGATCCCTC 120 ||||| |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||| Sbjct 130 ACCGTGAAGTAGACCCGACGATCTGGCGCGCTTGTGCTGGAGCCTCCGTCCAGATCCCTG 189 Query 121 TCC-TCTACTCTAGGGTTTACTACTTCCCTCAAGGTCATGTGGAGCACTGTTGCCCTCTC 179 ||| || ||||||||||||||||||| || |||||||| || |||||||||||||||||| Sbjct 190 TCCTTC-ACTCTAGGGTTTACTACTTTCCACAAGGTCACGTTGAGCACTGTTGCCCTCTC 248 Query 180 ATCTCTACTCTTCCTTCGTCTACCTCTCCGGTTCCATGTCTCATCACTTCCATCCAGTTG 239 |||||||||||||||| || ||||| |||||||||||| |||||||||| || |||||| Sbjct 249 CTCTCTACTCTTCCTTCCTCCACCTCGCCGGTTCCATGTATCATCACTTCAATTCAGTTG 308 Query 240 CTCGCCGATCCGATCACTGACGAGGTTTTTGCTCACCTTGTTCTTCAACCGGTGACGCAG 299 |||||||||||| |||| |||||||| |||||||||||| ||||||||||| |||||||| Sbjct 309 CTCGCCGATCCGGTCACCGACGAGGTCTTTGCTCACCTTATTCTTCAACCGATGACGCAG 368 Query 300 GAGCAGTTTACTCCGACTAATTATTCAAGATTCGGTAGATACGATGGCGATGTTGATGAT 359 |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| Sbjct 369 CAGCAGTTTACTCCGACTAATTATTCACGATTCGGCAGATTCGATGGCGATGTTGATGAT 428 Query 360 AACAACAAGGTGACTACCTTCGCCAAGATTCTCACGCCTTCTGATGCTAACAATGGAGGT 419 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 429 AACAACAAGGTGACTACCTTCGCCAAAATTCTCACGCCTTCTGATGCTAACAATGGAGGT 488 Query 420 GGATTTTCGGTTCCTCGTTTCTGTGCTGATTCCGTCTTTCCTCCGCTTGATTTTCAAATC 479 || || || ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct 489 GGCTTCTCCGTTCCTCGTTTCTGTGCTGATTCCGTCTTCCCTCTGCTTAATTTTCAAATC 548 Query 480 GATCCACCGGTTCAGAAGCTCTACATCACCGATATCCATGGAGCTGTTTGGGATTTCAGG 539 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 549 GATCCACCGGTTCAGAAGCTCTACGTCACTGATATCCATGGAGCTGTTTGGGATTTCAGG 608 Query 540 CATATCTATCGCGGTACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTG 599 ||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||| Sbjct 609 CATATCTATCGCGGTACACCGAGGCGTCACTTGCTAACAACGGGATGGAGTAAGTTCGTC 668 Query 600 AATAGCAAGAAGCTAATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAG 659 |||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| Sbjct 669 AATAGCAAGAAGCTCATCGCTGGAGATTCGGTGGTGTTTATGAGAAAATCTGCAGATGAG 728 Query 660 ATGTTTATGGGTGTTAGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCAGCTATTAC 719 ||||| || || |||||| |||| |||||||||||||||| ||||||||| ||||||||| Sbjct 729 ATGTTCATCGGCGTTAGGAGAACTCCGATCTCAAGCAGCGACGGAGGAAGTAGCTATTAC 788 Query 720 GGCGGGGATGAGTACAACGGCTATTACAGCCAGAGTAGCGTTGCTAAGGAAGATGACGGG 779 || || |||||||| ||||| || ||||| |||||||||||||| ||||||||||| ||| Sbjct 789 GGAGGAGATGAGTATAACGGTTACTACAGTCAGAGTAGCGTTGCCAAGGAAGATGATGGG 848 Query 780 AGTGCGAAGAAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACG 839 ||| ||||||||||||||||||| |||||||| || || ||||| ||||||||||||||| Sbjct 849 AGTCCGAAGAAGACGTTTAGGAGATCTGGGAATGGTAAGTTGACTGCTGAGGCTGTGACG 908 Query 840 GAGGCGATCAATAGAGCAG-CTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGC 898 || |||||||||||||| | || ||||||| |||||||||||||||| ||||||| |||| Sbjct 909 GATGCGATCAATAGAGC-GTCTCAGGGATTACCATTTGAGGTGGTGTTTTATCCGGCTGC 967 Query 899 TGGATGGTCAGAATTTGTGGTGAGAGCTGAAGATGTTGAGTCCTCCATGTCTATGTTTTG 958 ||||||||| || ||||| ||||||||||||||||||||||| || |||||||||| ||| Sbjct 968 TGGATGGTCTGAGTTTGTTGTGAGAGCTGAAGATGTTGAGTCTTCAATGTCTATGTATTG 1027 Query 959 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTG 1018 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 1028 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAAGATTCTTCTCGGATCACATG 1087 Query 1019 GTTTCAGGGCATTGTTTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATG 1078 |||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 1088 GTTTCAAGGCATCGTTTCCTCTACTTATCAGGAGACCGGTCCATGGCGTGGATCTCCATG 1147 Query 1079 GAAACAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1138 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 GAAGCAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1207 Query 1139 TCCTTGGCAAGTGGAAATTGTTGCAAATGCAACCCAACTTCATGCTACTTTCCCTCCAGC 1198 ||| |||||||||||||||| |||| ||||||| ||||| ||| | ||||||||||||| Sbjct 1208 TCCATGGCAAGTGGAAATTGCTGCACATGCAACTCAACTGCATACCCCTTTCCCTCCAGC 1267 Query 1199 AAAGAGATTGAAGTATCCACAACCC---GGAGGGTTCTTGAGTGGAGATGACGGAGATAT 1255 |||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 1268 AAAGAGGTTGAAGTATCCACAACCCGGAGGAGGGTTCTTGAGTGGAGATGATGGAGAAAT 1327 Query 1256 CCCCTATTCTCAAAGAGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTATATGTT 1315 || ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1328 CCTTTATCCTCAAAGTGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTCTATGTT 1387 Query 1316 CCCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1375 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 CTCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1447 Query 1376 CAATCCAACCGGATTCATTGGAGAGAA-TCCTCCCCAG-TCATGCACCAATAACTTCTTC 1433 ||||||||||||||||||||||| ||| |||||||||| | || ||||||||||||||| Sbjct 1448 CAATCCAACCGGATTCATTGGAG-GAAATCCTCCCCAGCT-ATTCACCAATAACTTCTTA 1505 Query 1434 AGTCCGCTTCCAACCGGGTTGGGAAAAGTGTCGACTGAGATGA--AT-TTTGGCAGTCCA 1490 ||||||||||| | ||||||||||||||||||||||||| | ||||||||||| Sbjct 1506 AGTCCGCTTCCT---GATTTGGGAAAAGTGTCGACTGAGATGATGAACTTTGGCAGTCCG 1562 Query 1491 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAACGACCTG 1550 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1563 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAATGACCTG 1622 Query 1551 GTTGGAAACCGAG-CCCCCATTTCAGCA-AAAGCTAACTCGATTCGGTTATTTGGCAAGA 1608 ||||||||||||| ||||| ||||| | |||| ||||||||||| ||| |||||||||| Sbjct 1623 GTTGGAAACCGAGGCCCCC-TTTCAA-AGAAAGTTAACTCGATTCAGTTGTTTGGCAAGA 1680 Query 1609 CCATTACCGTGCAGGAGCGTTCTGAGAGCGGTCTTGCAGAGTCTGGCTTGTGTGAAGAGG 1668 |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1681 TCATTACCGTGGAGGAGCATTCTGAGAGCGGTCCTGCAGAGTCTGGCTTGTGTGAAGAGG 1740 Query 1669 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAATTGTCCTTGA-CACATG 1719 |||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 1741 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAGTTGTCCTT-ATCACATG 1791 > AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -related, low similarity to auxin response factor 10 (Arabidopsis thaliana) GI:6165644; blastp match of 82% identity and 6.9e-77 P-value to GP|3717296|emb|CAA03738.1||A63701 unnamed protein product {unidentified} | chr2:3278376-3280384 FORWARD LENGTH=2009 Length=2009 Score = 556 bits (301), Expect = 2e-157 Identities = 466/545 (86%), Gaps = 13/545 (2%) Strand=Plus/Plus Query 555 ACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAATAGCAAGAAGCTA 614 ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 658 ACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAACAATAAGAAGCTA 717 Query 615 ATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAGATGTTTATGGGTGTT 674 |||||||| ||||| || || |||||||||||| | || |||||||||||||| ||||| Sbjct 718 ATCGCTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTA 777 Query 675 AGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCA-GCTAT-TACGGCGGGGATGAGT 732 |||||| |||| ||||| || | || |||||||| || ||| | |||||||| ||||||| Sbjct 778 AGGCGAGCACCAATCTCTAGTAACGTCGGAGGAA-CAAGCT-TCTACGGCGGAGATGAGT 835 Query 733 ACAACGGCTATTA-CAGC-CAGA-GTAG-CGTTGCTAAGGAAGATGACGGGAGTGCGAAG 788 || | ||||| ||| || | | || ||||||||||||||| ||||| ||||||||| Sbjct 836 ACTGTAGTTATTATCAGAGCA-ATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAG 894 Query 789 AAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACGGAGGCGATC 848 ||| |||||||||| ||||||||||||||||||| ||||| ||||| | |||||||| Sbjct 895 AAGGGGTTTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATT 954 Query 849 AATAGAGCAGCTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGCTGGATGGTCA 908 |||||||||||| |||| ||||| ||||||||||| |||||||| || ||||||||||| Sbjct 955 AATAGAGCAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCG 1014 Query 909 GAATTTGTGGTGAGAG-CTGAAGATGTTGAGTCCTCCATGTCTATGTTTTGGACTCCTGG 967 || |||||||||| || | |||||||||||| | |||||| |||| || ||||||||||| Sbjct 1015 GACTTTGTGGTGA-AGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGG 1073 Query 968 GACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTGGTTTCAGGG 1027 ||| |||| |||||||| |||||||||||||| || || ||||| |||||||||||||| Sbjct 1074 TACTAGAGTGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGG 1133 Query 1028 CATTGT-TTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATGGAAACAGC 1086 ||||| ||| | ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1134 GATTGTCTTC-TATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGC 1192 Query 1087 TTCAG 1091 ||||| Sbjct 1193 TTCAG 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87148146120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5