BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927208 Length=497 Score E Sequences producing significant alignments: (Bits) Value AT1G78040.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 667 0.0 > AT1G78040.1 | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:29345838-29347107 FORWARD LENGTH=938 Length=938 Score = 667 bits (361), Expect = 0.0 Identities = 431/465 (93%), Gaps = 4/465 (1%) Strand=Plus/Plus Query 34 TTGGAAAGAATACAATGGTGGTTCAAGGTCGTACTTACTGTGACCTTTGCAAATTCGGCT 93 ||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| Sbjct 229 TTGGAAAGAATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCT 288 Query 94 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAG 153 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 289 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAG 348 Query 154 ACAGGAAGACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATT 213 |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| | Sbjct 349 ACAGGAAGACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGT 408 Query 214 ACAAGTTCATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAA 273 | |||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||| Sbjct 409 ATAAGTTCATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAA 468 Query 274 GCGCAG-TCAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 332 || | | | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 GCTCGGAT-AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 527 Query 333 AACCATTACAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAA 392 |||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct 528 AACCATTACAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAA 587 Query 393 GAAGTGAGCGATGTGTTCTGCTCTGCTCTGTATCACAAGTATATGGTTGATGAAGATGAG 452 |||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 588 GAAGTGAGTGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAG 647 Query 453 GATGATATTAAAAGCCATCTCTAATCTCTCTGTTTTTAATCTTAT 497 ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 648 GATGATATTAAAAACCATCTCTAATCTCTCTGTTT--AATCTTAT 690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23710517384 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5