BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927208

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78040.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   667    0.0  


> AT1G78040.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr1:29345838-29347107 FORWARD LENGTH=938
Length=938

 Score =  667 bits (361),  Expect = 0.0
 Identities = 431/465 (93%), Gaps = 4/465 (1%)
 Strand=Plus/Plus

Query  34   TTGGAAAGAATACAATGGTGGTTCAAGGTCGTACTTACTGTGACCTTTGCAAATTCGGCT  93
            ||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||
Sbjct  229  TTGGAAAGAATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCT  288

Query  94   TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAG  153
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  289  TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAG  348

Query  154  ACAGGAAGACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATT  213
            |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |
Sbjct  349  ACAGGAAGACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGT  408

Query  214  ACAAGTTCATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAA  273
            | |||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||
Sbjct  409  ATAAGTTCATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAA  468

Query  274  GCGCAG-TCAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG  332
            || | | | ||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  GCTCGGAT-AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG  527

Query  333  AACCATTACAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAA  392
            |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct  528  AACCATTACAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAA  587

Query  393  GAAGTGAGCGATGTGTTCTGCTCTGCTCTGTATCACAAGTATATGGTTGATGAAGATGAG  452
            |||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct  588  GAAGTGAGTGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAG  647

Query  453  GATGATATTAAAAGCCATCTCTAATCTCTCTGTTTTTAATCTTAT  497
            ||||||||||||| |||||||||||||||||||||  ||||||||
Sbjct  648  GATGATATTAAAAACCATCTCTAATCTCTCTGTTT--AATCTTAT  690



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23710517384


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5