BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927264
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ... 1825 0.0
AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase 2 ... 977 0.0
> AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase
1 | chr1:29535285-29537417 REVERSE LENGTH=1600
Length=1600
Score = 1825 bits (988), Expect = 0.0
Identities = 1171/1260 (93%), Gaps = 9/1260 (1%)
Strand=Plus/Plus
Query 3 ATTCTGGGTTTTGTGGGAATGATGACGTCATGTCGGAATATAGATTTAGGTACGATGATG 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTCTGGGTTTTGTGAGAATGATGACGTCATGTCGGAATATAGATTTAGGTACGATGATG 296
Query 63 ATGGCATGTGGTTGCGGCCGTCGTCAATTTCCTTCCTTAGCAAAGACTGTTGTTTGTAAG 122
|||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 297 ATGGCATGTGGTTGTGGCCGTCGTCAGTTTCCTTCATTAGCGAAGAC---TGTTTGTAAG 353
Query 123 TTTGGTAGCAGCAATAGAAGCTATGGCGG--TGG-GATTCTTTGCAAAGCGGTACCGACG 179
||| |||||||||||||||||||||||| ||| | |||||||||||| || |||
Sbjct 354 TTTACTAGCAGCAATAGAAGCTATGGCGGTCTGGTGGGGAGTTGCAAAGCGGTGCCAACG 413
Query 180 AAATCAAAGGAGATCTCTTTGCTCAATGGTATTGGTCAAGCTCAAACAGTGACTTTTGAT 239
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 414 AAATCAAAGGAGATCTCTTTGCTCAATGGTATTGGTCAATCTCAAACAGTGAGTTTTGAT 473
Query 240 TTGAGGCATGAGTCTAAACAGCCTATTTCGTTGGTCAATCTGTTTGAGCTAGTAGCTAAT 299
|||| || ||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 474 TTGAAACAAGAGTCAAAACAGCCTATTTCGTTGGTGACTCTGTTTGAGCTAGTAGCTGTT 533
Query 300 GATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTCTG 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 534 GATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGCGGAAAATCCGGTTTTG 593
Query 360 ATATCTGCCGCTGAGCAAATTTTCGGAGCTGGTGGTAAAAGAATGAGACCGGGTTTGGTA 419
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAATGAGACCGGGTTTGGTA 653
Query 420 TTCCTTGTATCACATGCCACGGCGGAATTAGCAGGCTTAAAGGAACTTACAACTGAACAC 479
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 654 TTCCTTGTATCACATGCCACGGCGGAATTAGCAGGCCTAAAGGAACTAACAACAGAACAC 713
Query 480 CGGCGTTTGGCTGAGATCATCGAGATGATACACACTGCAAGCTTGATACACGACGACGTG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 CGGCGTTTGGCTGAGATCATCGAGATGATACACACTGCAAGCTTGATACACGACGATGTG 773
Query 540 TTGGATGAGAGTGATATGCGAAGAGGAAAGGAAACTGTTCACGAGCTTTTCGGCACAAGA 599
|| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 774 TTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCATGAGCTTTTCGGCACAAGA 833
Query 600 GTAGCAGTGTTAGCTGGAGATTTCATGTTTGCTCAAGCGTCATGGTACTTAGCAAATCTC 659
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCATGGTACTTAGCAAATCTC 893
Query 660 GAGAATCTTCAAGTTATTAAGCTCATCAGTCAGGTGATCAAGGACTTTGCAAGCGGAGAG 719
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 894 GAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAAGACTTTGCAAGCGGAGAG 953
Query 720 ATAAAGCAGGCATCCAGCTTATTTGACTGCGACACTAAGCTCGACGACTACTTACTCAAG 779
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 954 ATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTCGACGAGTACTTACTCAAA 1013
Query 780 AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGC 839
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1014 AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAAAGGAGCTGCCATTTTCAGC 1073
Query 840 AGAGTTGAGACTGATGTGACAGAGCAAATGTATGAGTTTGGGAAGAATCTCGGTCTCTCT 899
||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1074 AGAGTTGAGCCTGATGTGACAGAACAAATGTACGAGTTTGGGAAGAATCTCGGTCTCTCT 1133
Query 900 TTTCAGATAGTCGATGATATTTTGGATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCA 959
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTCCAGATAGTTGATGATATTTTGGATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCA 1193
Query 960 GCAGGGAGTGACTTGGCTAAAGGTAACTTAACCGCACCCGTGATTTTCGCTCTGGAGAAA 1019
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1194 GCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGG 1253
Query 1020 GAGGCAAGGCTGAGAGAGATCATTGAGTCTGAATTTTGTGAGGCGGGTTCTCTGGAAGAA 1079
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1254 GAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAA 1313
Query 1080 GCAATTGAAATGGTGAGAGAAGGCGGGGGAATCAGGAGAGCACAAGAATTGGCTAGAGAG 1139
|| |||||| ||||| | |||| ||||| || | ||||||||||||||||||||| |||
Sbjct 1314 GCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAG 1373
Query 1140 AAAGCTGATGACGCGATAAAGAATCTGCAGTGCCTGCCTCGAAGTG-CTTTCCGGTCAGC 1198
|||||||||||||| ||||||||||| ||||| || |||||||||| ||| | |||| ||
Sbjct 1374 AAAGCTGATGACGCTATAAAGAATCTACAGTGTCTACCTCGAAGTGGCTT-CAGGTCGGC 1432
Query 1199 TCTAGAAGAAATGGTGATGTATAATCTCGAAAGAATTGATTAGCTTTTCCAACAGAAGTT 1258
||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||||||
Sbjct 1433 TCTAGAAGATATGGTGTTGTATAACCTCGAAAGAATTGATTAGCTTT-CCAAAAGAAGTT 1491
> AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase
2 | chr1:5829080-5831343 FORWARD LENGTH=1591
Length=1591
Score = 977 bits (529), Expect = 0.0
Identities = 917/1102 (83%), Gaps = 35/1102 (3%)
Strand=Plus/Plus
Query 161 TTGCAAAGCGGTACCGACGAAATCAAAGGAG-ATCTCTTTGCTCAATGGTATTGGTCAAG 219
||||| ||| || ||| | ||||| |||||| || ||| || |||| |||||||||||||
Sbjct 383 TTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAAT-TCTCTGGTCAACGGTATTGGTCAAG 441
Query 220 CTCAAACAGTGACT-TTTGATTTGAGGCATGAGTCTA--AACAGCCTATTTCGTTGGTCA 276
||||||||||| | | || ||||||| ||||| | || |||| || || |||| |
Sbjct 442 ATCAAACAGTGA-TGCTCAATCTGAGGCAAGAGTC-ACGAA-AGCCAATATCTTTGG-AA 497
Query 277 A-TCTGTTTGAGCTAGTAGCTAATGATCTGCAGACTTTGAATGACAATCTTTTATCGATT 335
| |||||||||| | |||||| ||||| |||||| ||||| ||||||||||||||||||
Sbjct 498 ACTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATT 557
Query 336 GTTGGTGCAGAAAATCCGGTTCTGATATCTGCCGCTGAGCAAATTTTCGGAGCTGGTGGT 395
||||||||||||||||||||| |||||||||| ||||||||||| ||| | ||||||||
Sbjct 558 GTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGTGGC 617
Query 396 AAAAGAATGAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGCAGG 454
|| || ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 618 AAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGCAGG 676
Query 455 CTTAAAGGAACTTACAACT-GAACACCGGCGTTT-GGCTGAGATCATCGAGATGATACAC 512
|||||||||||||||| | ||||| |||||||| || ||||||||| |||||||| |||
Sbjct 677 CTTAAAGGAACTTACAG-TAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTCAC 734
Query 513 ACTGCAAGCTTGATACACGACGACGTGTTGGATGAGAGTGATATGCGAAGAGGAAAGGAA 572
|| ||||| ||||||||||| || ||||| || || ||||||||||||||||||| ||||
Sbjct 735 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAA 794
Query 573 ACTGTTCACGAGCTTTTCGGCACAAGAGTAGCAGTGTTAGCTGGAGATTTCATGTTTGCT 632
|| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct 795 ACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCT 854
Query 633 CAAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTCAAGTTATTAAGCTCATCAGTCAG 692
||||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||
Sbjct 855 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAG 914
Query 693 GTGATCAAGGACTTTGCAAGCGGAGAGATAAAGCAGGCATCCAGCTTATTTGACTGCGAC 752
|||||||| || ||||||||||| ||||||||||| ||||| || ||||| || || ||
Sbjct 915 GTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGAT 974
Query 753 A-CTAAGCTCGACGACTACTTACTCAAGAGTTTCTACAAGACAGCCTCTTTAGTGGCTGC 811
| ||||| || |||||| | || ||||||| |||||||||||| || ||||| |||||
Sbjct 975 GTC-AAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGC 1033
Query 812 AAGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGAGA-CTGATGT-GACAGAGCAAATG 869
||||||||||||||| || |||||||| | ||| || | | | || | |||||||||||
Sbjct 1034 AAGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCA-AGGTCG-CAGAGCAAATG 1091
Query 870 TATGAGTTTGGGAAGAATCTCGGTCTCTCTTTTCA-GATAGTCGATGATATTTTGGATTT 928
||| |||| ||||||||||||||| | |||||||| | |||| ||||| ||| |||| ||
Sbjct 1092 TATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAG-TAGTTGATGACATTCTGGACTT 1150
Query 929 CACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGACTTGGCTAAAGGTAACTT 988
||||||||| ||||||||| | || ||||| |||| | |||| | || ||||||||| |
Sbjct 1151 CACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACAT 1210
Query 989 AACCGCACCCGTGATTTTCGCTCTGGAGAAAGAGGCAAGGCTGAGAGAGATCATTGAGTC 1048
||| || || ||||| ||||| || ||||| ||| ||||||| |||||||||||||||||
Sbjct 1211 AACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTC 1270
Query 1049 TGAATTTTGTGAGGCGGGTTCTCTGGAAGAAGCAATTGAAATGGTGAGAGAAG-GCGG-G 1106
||| ||||||||| | || || || |||||||| |||||||| || ||| || |||| |
Sbjct 1271 TGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGA-AATCGCGGTG 1329
Query 1107 GGAATCAGGAGAGCACAAGAATTGGCTAGAG-AGAAAGCTGATGAC--GCGATAAAGAAT 1163
||| ||| || ||| |||||||| || | || |||||||||| || ||| ||||||||
Sbjct 1330 GGA-TCAAGAAAGCTCAAGAATTAGCAA-AGGAGAAAGCTGA--ACTTGCGTTAAAGAAT 1385
Query 1164 CTGCAGTGCCTGCCTCGAAGTGCTTTCCGGTCAGCTCTAGAAGAAATGGTGATGTATAAT 1223
|| | || || ||| | |||| |||| | || ||||| || || ||||| |||| ||||
Sbjct 1386 TTGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAAT 1445
Query 1224 CTCGAAAGAATTGATTAGCTTT 1245
|| ||||| ||||||||| |||
Sbjct 1446 CTTGAAAGGATTGATTAG-TTT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5