BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927355 Length=1621 Score E Sequences producing significant alignments: (Bits) Value AT1G79360.1 | Symbols: ATOCT2, OCT2, 2-Oct | organic cation/car... 2621 0.0 > AT1G79360.1 | Symbols: ATOCT2, OCT2, 2-Oct | organic cation/carnitine transporter 2 | chr1:29854038-29855821 REVERSE LENGTH=1784 Length=1784 Score = 2621 bits (1419), Expect = 0.0 Identities = 1553/1619 (96%), Gaps = 3/1619 (0%) Strand=Plus/Plus Query 6 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCGAACTCGTCA 65 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 84 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCCAACTCGTCA 143 Query 66 TCACCAAGATCTTTCGACGACACAATCGAGAGTTACATAGGAAGCTTTGGGTGGGCTCAG 125 ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 144 TCACCGAGATCTCTCGACGACACAATCGAGAGTTACATTGGAAGCTTTGGGTGGGCTCAG 203 Query 126 TTTCTTCAAGCGGCTTTAGTTTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 185 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 204 TTTCTTCAAGCGGCTTTAGTCTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 263 Query 186 TCTGTGTTCACAGACTCCGAACCCACGTGGCACTGCACCGACTCAAACTCGATCTGCCAT 245 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 264 TCTGTGTTTACAGACTCCGAACCCACGTGGCACTGCACCGACTCGAACTCGATCTGCCAT 323 Query 246 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 383 Query 306 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 443 Query 366 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 503 Query 426 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTCTCGTGTCTCGTGATGGCGATTTCA 485 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct 504 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTGTCCTGTCTCGTTATGGCGATATCA 563 Query 486 ACGATGCTAACCGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 545 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 ACGATGCTAACGGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 623 Query 546 GGATTCGGTCGAGCGACGATAGGGACATGTGCCCTCGTGCTTTCGACGGAATTGGTTGGG 605 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 624 GGATTTGGTCGAGCGACGATAGGGACATGTGCGCTCGTTCTTTCGACGGAATTAGTTGGG 683 Query 606 AAGAAATGGCGAGGACGAGTTGGAATCATGAGTTTCTTCGGATTCATGCTTGGATTTTTG 665 |||||||||||||||||||| || || |||||||||||||||||||||||||| |||||| Sbjct 684 AAGAAATGGCGAGGACGAGTAGGGATAATGAGTTTCTTCGGATTCATGCTTGGCTTTTTG 743 Query 666 TCTCTTCCATTGATGGCTTACATGAACAGAGGAAGTTCGTGGAGGATTCTCTATGTATGG 725 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| Sbjct 744 TCTCTTCCTTTGATGGCTTACATGAACAGAGGAAGTTCTTGGAGGATTCTCTACGCATGG 803 Query 726 ACGTCGATTCCGACAATAATCTACTGCGTTCTTGTTCGATTTTTCGTTTGTGAGTCTCCG 785 || |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 804 ACTTCGATTCCAACGATAATATACTGCGTTCTTGTTCGGTTTTTCGTTTGTGAGTCTCCA 863 Query 786 AGGTGGCTTTTCGTTAGAGGTCGTAAAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 845 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 864 AGGTGGCTTTTCGTTAGAGGCCGTAGAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 923 Query 846 TCGATTCCGTCGACTGATGTAAACATTGGTGGTGCAATATCTATGAGCTTTTCGAGCTTA 905 ||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||| Sbjct 924 TCGATTCCGTCTACTGATGTAAGCAGTGGTGGTGCAATATCTATGAGTTTTTCGAGCTTA 983 Query 906 CCATTTGAAGATGAGGAAGAGAAGCCTA--A-TAATGTTAACATCTTCACGACCATGAAG 962 || |||||||| || ||||||||||||| | |||||||||||||||||||||||||||| Sbjct 984 CCTTTTGAAGAAGATGAAGAGAAGCCTAGTACTAATGTTAACATCTTCACGACCATGAAG 1043 Query 963 ATGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1022 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 GTGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1103 Query 1023 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1163 Query 1083 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACTCTTTTC 1142 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1164 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACGCTTTTC 1223 Query 1143 CTAGTTGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1202 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 CTAGTCGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1283 Query 1203 TCTAGCGTTCTCATATTTGCGTTACAGAATATGAGAATCGGAAACCATGGGGCGCTACAG 1262 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||| Sbjct 1284 TCTAGCGTTCTCATATTTGCGTTACATAATATGAGAATTGGAAACCACGGGGCGTTACAG 1343 Query 1263 CTGGCGTTAGAGCTAATCTCTTACTTTAGTGCGTGTTCCGCTTTTAACATGGAGATGATA 1322 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1344 TTGGCGTTAGAGCTAATCTCTTACTTTAGCGCGTGTTCGGCTTTTAACATGGAGATGATA 1403 Query 1323 TACACAATCGAGTTGTTTCCTACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1382 ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1404 TACACGATCGAGCTGTTTCCGACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1463 Query 1383 GCTTTGGTGCTTGGTGGGGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACTCG 1442 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1464 GCTTTGGTGCTTGGTGGAGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACGCG 1523 Query 1443 TTCTGGTCGTTCGGGTTGTTCGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1502 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1524 TTCTGGTCGTTCGGATTGTTTGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1583 Query 1503 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAT 1562 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1584 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAC 1643 Query 1563 CGACGGAGTAAAGTCGCCATTAATAGTGTGATTGCATGATATGATGAAGAATTTGAAAA 1621 || ||||||||||||||| |||||| ||| ||||||||| ||| ||||||||||||||| Sbjct 1644 CGGCGGAGTAAAGTCGCCGTTAATAATGTCATTGCATGAAATGGTGAAGAATTTGAAAA 1702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80069869275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5