BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927413
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resist... 2558 0.0
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion trans... 1447 0.0
> AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resistance-associated
macrophage protein 1 | chr1:30372879-30375696
REVERSE LENGTH=1838
Length=1838
Score = 2558 bits (1385), Expect = 0.0
Identities = 1560/1642 (95%), Gaps = 22/1642 (1%)
Strand=Plus/Plus
Query 1 GATTAGG-A-AGAGAGACGGCGATGGCGGCTACAGGATCTGGACGGTCTCAATTCATTTC 58
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 GATTAGGAAGAGAGAGACGGCGATGGCGGCTACAGGATCTGGACGGTCTCAATTCATTTC 90
Query 59 CAGCTCCGGCGGTAACCGAAG------------------CATCGAGAACTCTGATTCTAA 100
||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 91 CAGTTCCGGCGGTAACCGAAGCTTCTCCAATTCTCCACTCATCGAGAACTCTGATTCTAA 150
Query 101 TCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTTCTTCGCTTACTTAGGCCCTGG 160
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 151 TCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGG 210
Query 161 TTTTCTTGTTTCAATCGCATATATTGATCCTGGAAATTTTGAGACTGATCTGCAATCTGG 220
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 211 TTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTTTGAGACTGATCTGCAAGCTGG 270
Query 221 AGCACAATACAAGTATGAGTTACTTTGGATCATATTGGTGGCCTCGTGTGCAGCTTTGGT 280
|||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 271 AGCACACTACAAGTATGAATTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGT 330
Query 281 GATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTGAGCAATG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTGAGCAATG 390
Query 341 TAGAGCAGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCAGAAATTGCAGT 400
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 TAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAATTGCAGT 450
Query 401 AGTCGCTTGTGACATACCTGAAGTTATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAG 460
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AGTTGCTTGTGACATACCGGAAGTTATCGGAACAGCTTTTGCTCTGAACATGCTCTTTAG 510
Query 461 CATACCGGTGTGGATTGGTGTTCTTTTGACAGGCTTCAGTACTCTGATTCTTCTCGCGCT 520
||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||| ||
Sbjct 511 CATACCGGTGTGGATCGGTGTTCTTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACT 570
Query 521 TCAAAAATACGGGGTGAGAAAGTTGGAGTTCTTGATTGCGTTTCTTGTGTTCACAATTGC 580
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 571 TCAAAAATACGGGGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGC 630
Query 581 TATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCCTACATGG 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCCTACATGG 690
Query 641 TCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTTGCAATCTCTTTGCTCGG 700
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 691 TCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGG 750
Query 701 AGCCATGGTTATGCCGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCCAGGAAAAT 760
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 751 AGCCATGGTTATGCCGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAAT 810
Query 761 CCCTCGTTCCACTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGCGGATT 820
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 811 CCCTCGTTCCGCTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGTGGATT 870
Query 821 GGCTCTAATGGTGGCCTTTCTCATAAATGTCTCTGTGATATCAGTAAGTGGGGCTGTTTG 880
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 871 GGCTCTAATGGTGGCCTTTCTCATAAACGTCTCTGTAATATCAGTAAGCGGGGCTGTTTG 930
Query 881 TAATGCCCCTAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAA 940
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TAATGCCCCCAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAA 990
Query 941 GGCTTCGTTTCTGCTACGGAACGTTGTGGGAAAGTGGAGCTCAAAGCTATTTGCAATAGC 1000
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 991 GGCTTCGTTTCTGCTACGGAACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGC 1050
Query 1001 GCTTCTTGCCTCTGGTCAGAGCTCGACGATAACAGGAACTTATGCTGGACAATACGTAAT 1060
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1051 GCTTCTTGCTTCTGGTCAGAGCTCGACGATAACCGGAACTTATGCTGGACAATATGTAAT 1110
Query 1061 GCAGGGCTTTCTTGATCTAAGACTCGAGCCATGGCTCAGAAACTTACTAACAAGATGCTT 1120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1111 GCAGGGCTTTCTTGATCTCAGACTCGAGCCATGGCTCAGAAACTTACTAACAAGATGTTT 1170
Query 1121 AGCTATAATCCCGAGTCTAATTGTTGCTCTCATTGGCGGTTCAGCTGGAGCTGGAAAGTT 1180
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1171 AGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTT 1230
Query 1181 AATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCCCGTTCGCGTTGGTTCCTCTTCT 1240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1231 AATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCT 1290
Query 1241 CAAGTTCACTAGCTGCAAAACCAAGATGGGTTCACACGTCAACCCAATGGCGATTTCAGC 1300
||| ||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1291 CAAATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGATTACAGC 1350
Query 1301 TTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAG 1410
Query 1361 TTACATCAAACTGCTTATCCATAGTCATATGAAGCTTGCCCTCGTCGTCTTCTGTGGAAT 1420
|| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1411 TTTCATCAAACTGCTTATCCACAGTCATATGAAGCTTATCCTCGTCGTCTTCTGTGGAAT 1470
Query 1421 TCTTGGGTTCGCAGTCATTGCTCTCTATTTAGCTGCCATAGCTTACCTTGTCTTCCGGAA 1480
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1471 TCTTGGGTTCGCAGGCATTGCTCTCTATTTAGCCGCCATAGCTTACCTTGTCTTCCGGAA 1530
Query 1481 AAACAGAGAAGCCACTCCTCTTCTTGCATCAAGAAACTCACAAAATGTGGAGACACTTCC 1540
|||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1531 AAACAGAGTAGCCACTTCTCTTCTTATTTCAAGAGACTCACAAAATGTGGAGACACTTCC 1590
Query 1541 AAGACAGGACATTGTCAACATGCAGTTACCATGTAGAGTGTCTACCTCCGATGTTGATTG 1600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1591 AAGACAGGACATTGTCAACATGCAGTTACCATGTAGAGTATCTACCTCCGATGTTGACTG 1650
Query 1601 AGT-ATTCATAAAACTGAGGAT 1621
||| || ||| || || |||||
Sbjct 1651 AGTCAT-CATTAAGCTTAGGAT 1671
> AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter
6 | chr1:5481665-5485082 REVERSE LENGTH=2137
Length=2137
Score = 1447 bits (783), Expect = 0.0
Identities = 1278/1515 (84%), Gaps = 42/1515 (3%)
Strand=Plus/Plus
Query 80 CATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTT 139
||| || ||||||||||||||||||||| ||||| ||||||| ||||||||||| || ||
Sbjct 70 CATAGAAAACTCTGATTCTAATCAGATTCTTGTCCCTGAGAAAAAGAGCTGGAAAAACTT 129
Query 140 CTTCGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAATTT 199
|||| | |||||||||||||| |||||||| ||||| || || |||||||||||||| ||
Sbjct 130 CTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTT 189
Query 200 TGAGACTGATCTGCAATCTGGAGCACAATACAAGTATGAGTTACTTTGGATCATATTGGT 259
||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 190 TGAAACTGATCTGCAATCAGGAGCTCAATACAAGTATGAGTTACTCTGGATCATATTGGT 249
Query 260 GGCCTCGTGTGCAGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGG 319
||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 250 GGCATCATGTGCAGCTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAGG 309
Query 320 AAAACATTTGGCTGAGCAATGTAGAGCAGAGTACTCCAAAGTTCCAAACTTTATGTTATG 379
||| || || || ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 310 AAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATG 369
Query 380 GGTCGTTGCAGAAATTGCAGTAGTCGCTTGTGACATACCTGAAGTTATCGGAACAGCTTT 439
||| ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| ||
Sbjct 370 GGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCCAGAAGTAATTGGAACAGCATT 429
Query 440 TGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATTGGTGTTCTTTTGACAGG-CTTCA 498
|||| | |||||||| || | || ||||| ||||||||||||||| | ||||| ||| |
Sbjct 430 TGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTT-A 488
Query 499 GTAC-TCTGATTCTTCTCGCGCTTCAAAAATACGGGGTGAGAAAGTTGGAGTTCTTGATT 557
|||| | |||||||||| || |||||| |||| ||| | |||||| | |||||||||||
Sbjct 489 GTACAT-TGATTCTTCTAGCACTTCAACAATATGGGATTAGAAAGCTCGAGTTCTTGATC 547
Query 558 GCGTTTCTTGTGTTCACAATTGCTATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCA 617
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 548 GCTTTTCTTGTGTTCACCATTGCCCTATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCA 607
Query 618 GACCCAGGAGAAGTCCTAC-ATGGTCTCTTTGTTCCTCAACTTAAAGGA-AATGGTGCAA 675
|||||| ||||||||| | ||||||||||||||||||| || |||| ||||||||||
Sbjct 608 GACCCAAAAGAAGTCCT-CTATGGTCTCTTTGTTCCTCAG-TTGAAGGGTAATGGTGCAA 665
Query 676 CTGGTCTT-GCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTCTTCCTCCAC 734
||||| || || || ||| | ||||| ||||||||||||||||| |||||||| ||||||
Sbjct 666 CTGGT-TTAGCGATATCTCTCCTCGGTGCCATGGTTATGCCGCACAATCTCTTTCTCCAC 724
Query 735 TCGGCCTTGGTTCTCTCCAGGAAAATCCCTCGTTCCACTT-CTGGTATCAAGGAAGCTTG 793
|| || || |||||||| |||||||| |||||||| | | | || ||||||||||||||
Sbjct 725 TCAGCTTTAGTTCTCTCTAGGAAAATTCCTCGTTC-AGTAACCGGCATCAAGGAAGCTTG 783
Query 794 -CAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCCTTTCTCATAAATGTCT 852
| ||| ||||||||||||||||||||| || || |||||||| |||||||| |||||||
Sbjct 784 TC-GGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCT 842
Query 853 CTGTGATATCAGTAAGTGGGGCTGTTTGTAATGCCCCTA-ACTTAAGCCCTGAAGATCGA 911
||||||||||||| ||||| || |||||||||||| | | | || || || |||||||||
Sbjct 843 CTGTGATATCAGTGAGTGGTGCAGTTTGTAATGCCTC-AGATTTGAGTCCAGAAGATCGA 901
Query 912 GCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGAACGTTGTGGG- 970
|||| ||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 902 GCTAGTTGCCAAGATTTGGACTTAAACAAAGCTTCATTTCTGCTACGTAACGTTGTGGGT 961
Query 971 AAAGTGGAGCTCAAAGCTATTTGCAATAGCGCTT-CTTGCCTCTGGTCAGAGCTCGACGA 1029
||| ||||||||||||||||||||||| ||| || ||||| || |||||||| || || |
Sbjct 962 AAA-TGGAGCTCAAAGCTATTTGCAATTGCG-TTGCTTGCTTCCGGTCAGAGTTCAACCA 1019
Query 1030 TAACAGGAACTTATGCTGGACAATACGTAATGCAGGGCTTTCTTGATCTAAGACTCGAGC 1089
|||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||||| || |
Sbjct 1020 TAACCGGAACATATGCTGGACAATACGTTATGCAGGGGTTTCTTGATTTAAGACTAGAAC 1079
Query 1090 CATGGCTCAGAAACTTACTAACAAGATGCTTAGCTATAATCCCGAGTCTAATTGTTGCTC 1149
|||||||||||||||| ||||| |||||||| ||||||||||| ||| | || ||||||
Sbjct 1080 CATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTT 1139
Query 1150 TCATTGGCGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCT 1209
| || || || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGATAGGTGGCTCAGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCT 1199
Query 1210 TTGAGCTCCCGTTCGCGTTGGTTCCTCTTCTCAAGTTCACTAGCTGCAAAACCAAGATGG 1269
|||| ||||| || || || || || |||||||| ||||| ||| | |||||||| ||||
Sbjct 1200 TTGAACTCCCATTTGCTTTAGTCCCACTTCTCAAATTCACAAGCAGTAAAACCAAAATGG 1259
Query 1270 GTTCACACGTCAACCCAATGGCGATTTCAGCTTTGACTTGGGTCATTGGTGGT-TTAATC 1328
| ||||||| ||| || | | ||||||| | |||||||| | |||||||| ||| |
Sbjct 1260 GCTCACACGCCAATTCACTTGTGATTTCATCGGTGACTTGGATAATTGGTGGACTTATT- 1318
Query 1329 ATGGGAATAAACATATACTATCTAGTAAGCAG-TTACATCAAACTGCTTATCCATAGTCA 1387
||||| |||||||| |||||||| |||||||| || |||||| ||||| ||||||||||
Sbjct 1319 ATGGGTATAAACATTTACTATCTTGTAAGCAGCTT-CATCAAGTTGCTTCTCCATAGTCA 1377
Query 1388 TATGAAGCTTGCC-CTCGTCGTCTTCTGT-GGAATTCTTGGGTTCGCAGTCATTGCTCTC 1445
||||| |||| | | | || |||| | ||| ||||||| ||| ||| |||||| | |
Sbjct 1378 CATGAACCTTGTAGC-CATTGTTTTCT-TAGGAGTTCTTGGATTCTCAGGCATTGC-CAC 1434
Query 1446 T-ATTTAGCTGCCAT-AGCTTACCTTGTCTTCCGGAAAAACAGAGAAG-CCAC-TCCTC- 1500
| | ||||||||||| || |||||||||| |||| ||||||||||| | || | ||| |
Sbjct 1435 TTACTTAGCTGCCATCAG-TTACCTTGTCCTCCGTAAAAACAGAGA-GTCCTCGTCCACA 1492
Query 1501 --TT-CTT-G-CATCAAGAAACTCACAAAATGTGGAGACACTTCCAAGACAGGACATTGT 1555
|| | | | | ||| | ||||| || | | ||| |||||||| ||| | || ||||
Sbjct 1493 CATTTCCTAGACTTCA-GTAACTCTCAGACCGAGGAAACACTTCCTAGAGAAGATATTGC 1551
Query 1556 CAACATGCAGTTACC 1570
|||||||||||||||
Sbjct 1552 CAACATGCAGTTACC 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5