BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927489

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   638    0.0  


> AT1G80180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G15400.3); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:30156826-30157584 REVERSE LENGTH=759
Length=759

 Score =  638 bits (345),  Expect = 0.0
 Identities = 430/467 (92%), Gaps = 21/467 (4%)
 Strand=Plus/Plus

Query  1    GAGGAACAGTTAGCGCCATCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGGCGA  60
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  91   GAGGAACAGTTAGCGCCGTCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGTCGA  150

Query  61   CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  151  CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG  210

Query  121  GCCAACGACCAGAAAGGCGAAACTCTACAACAGAACGAACATGCCAAGCTGATTACATCG  180
            |||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||| |||
Sbjct  211  GCCAACGACCGGAAAGGCGAGACTCTACAACAGGACGAACAGGCCAAGCTGATTACGTCG  270

Query  181  GAAGGACAGGATCAG------------ATCGCCGGAGACGGACTCAAGCCTATCAGAACT  228
            |||| ||||||||||            ||||||||||| |||||||| ||||||||||||
Sbjct  271  GAAGTACAGGATCAGACAACCAAACCTATCGCCGGAGAAGGACTCAAACCTATCAGAACT  330

Query  229  GACGGAGGCGCCGGTGGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGACAC  288
            ||||||         ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  331  GACGGA---------GGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGCCAC  381

Query  289  CATAGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG  348
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  382  CATCGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG  441

Query  349  TTTGGGTGTTGCTCAGCCTTCGGGAAGAAGCAGCCGGGGAAGAAGGTTAATCAGAGGAAA  408
            |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  442  TTTGGGTGCTGCTCTGCCTTCGGGAAGAAACAGCCGGGGAAGAAGGTTAATCAGAGGAAA  501

Query  409  AGGCCAACGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG  455
            |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  502  AGGCCAGCGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5