BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927489 Length=455 Score E Sequences producing significant alignments: (Bits) Value AT1G80180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 638 0.0 > AT1G80180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15400.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:30156826-30157584 REVERSE LENGTH=759 Length=759 Score = 638 bits (345), Expect = 0.0 Identities = 430/467 (92%), Gaps = 21/467 (4%) Strand=Plus/Plus Query 1 GAGGAACAGTTAGCGCCATCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGGCGA 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 91 GAGGAACAGTTAGCGCCGTCCATGGCGGGTCTTCAGAGATCCACCATCTCTTTCCGTCGA 150 Query 61 CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 151 CAGGGCTCTTCGGGTATAGTCTGGGACGATCGTCTCATCGCCGAGCTAAGCCAACAAGCG 210 Query 121 GCCAACGACCAGAAAGGCGAAACTCTACAACAGAACGAACATGCCAAGCTGATTACATCG 180 |||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||| ||| Sbjct 211 GCCAACGACCGGAAAGGCGAGACTCTACAACAGGACGAACAGGCCAAGCTGATTACGTCG 270 Query 181 GAAGGACAGGATCAG------------ATCGCCGGAGACGGACTCAAGCCTATCAGAACT 228 |||| |||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 271 GAAGTACAGGATCAGACAACCAAACCTATCGCCGGAGAAGGACTCAAACCTATCAGAACT 330 Query 229 GACGGAGGCGCCGGTGGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGACAC 288 |||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 331 GACGGA---------GGTATGGAGAGGAGTCGATCCAACGGAGGAGGAGCCATCCGCCAC 381 Query 289 CATAGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG 348 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 CATCGAAACACAGGGAGAGTGTCTCCGGCGGTGGACCCGCCGTCGCCGAGACTGTCGGCG 441 Query 349 TTTGGGTGTTGCTCAGCCTTCGGGAAGAAGCAGCCGGGGAAGAAGGTTAATCAGAGGAAA 408 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 442 TTTGGGTGCTGCTCTGCCTTCGGGAAGAAACAGCCGGGGAAGAAGGTTAATCAGAGGAAA 501 Query 409 AGGCCAACGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG 455 |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 502 AGGCCAGCGAAGCGTAGATCCAGATAGGCATGAACTAAAGTCTAAAG 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21665399819 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5