BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927508
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80030.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 2248 0.0
> AT1G80030.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr1:30104966-30108966 REVERSE LENGTH=1938
Length=1938
Score = 2248 bits (1217), Expect = 0.0
Identities = 1420/1515 (94%), Gaps = 25/1515 (2%)
Strand=Plus/Plus
Query 24 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCCCTGCCGCTGCCGCT-G-CCGCCG 81
|||||||||||||||||||||||||||||||||||| ||||||| |||| | | || |||
Sbjct 106 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCGCTGCCGCCGCCGATGGTCC-CCG 164
Query 82 --CCGATGGTCCGCGTTCCCTCTCT-TCTAATTCCGACGGCGGTACCAATCTCAGGTATC 138
|| | || | | ||||| || ||||||||||||| ||||| |||||||||
Sbjct 165 TTCC-CT-CTCTTC-TAATTTCTCTGCCT-TTTCCGACGGCGGTTCCAATTTCAGGTATC 220
Query 139 ACAAGAGCTTCTTAT--C---C--CTT--TCATCTTC-T-T-CGCCTTATCGAAATCGAC 186
||||||||||||| | | | ||| || ||||| | | ||||||||||||||||||
Sbjct 221 ACAAGAGCTTCTTGTCGCTTTCATCTTCGTCTTCTTCGTCTACGCCTTATCGAAATCGAC 280
Query 187 GGGGCCGTTCCCTCGTCGTGTTTGCTGCTTCCGGAGACTACTATGCTACTCTCGGTGTCC 246
||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct 281 GGGGCCGTTCCCTCGTCGTATTTGCTACTTCCGGAGACTACTACGCCACTCTCGGTGTCT 340
Query 247 CTAAATCTGCCAATAACAAGGAGATTAAAGCCGCGTATCGACGCCTCGCTCGTCAGTATC 306
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 341 CTAAATCTGCCAATAACAAGGAGATTAAAGCTGCTTATCGACGGCTCGCTCGTCAGTATC 400
Query 307 ATCCCGATGTGAACAAAGAACCTGGCGCAACTGACAAGTTCAAGGAAATCAGTGCTGCCT 366
|||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct 401 ATCCCGATGTGAACAAGGAACCCGGAGCAACTGAAAAATTCAAGGAAATCAGTGCTGCCT 460
Query 367 ATGAGGTGCTATCAGATGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGAG 426
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 461 ATGAGGTGCTATCAGACGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGTG 520
Query 427 TCAAGAGTACTGTAGGAGGAGCTTCTGGTACTTACACGACAAATCCCTTTGACCTTTTCG 486
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 521 TCAAGAGTACAGTAGGAGGAGCTTCTGGTCCTTACACGTCAAATCCCTTTGACCTTTTCG 580
Query 487 AGACATTCTTTGGTGCGAGTATGGGTGGATTTCCCGGGGTGGACCAAGCTGATTTTGGGA 546
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 581 AGACATTCTTTGGTGCAAGTATGGGTGGATTTCCCGGGATGGACCAAGCTGATTTTGGGA 640
Query 547 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 700
Query 607 TGTCAGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGCG 666
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 701 TTTCGGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGTG 760
Query 667 AAGCTTGTGCTGGCACTGGGGCAAAAGCAGGATCCAAGATGCGAATATGCTCCACTTGTG 726
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 761 AAGCTTGTGCTGGCACCGGGGCAAAAGCAGGATCCAAGATGAGAATATGCTCCACTTGTG 820
Query 727 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGGATGTTTTCACAGGTTT 786
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 821 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGCATGTTTTCACAGGTTT 880
Query 787 CTATATGTCCCAACTGTGGTGGAGATGGTGAGGTAATTTCTGAAAATTGCCGGAAATGCT 846
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 881 CTATATGTCCAAACTGTGGTGGAGATGGTGAGGTGATTTCTGAAAATTGCCGGAAATGTT 940
Query 847 CTGGAGAAGGACGTGTGCGTATaaaaaaaaGCATCAAAGTCAAAATTCCCCCGGGAGTTA 906
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CTGGAGAAGGGCGTGTGCGTATAAAAAAAAGCATCAAAGTCAAAATTCCCCCGGGAGTTA 1000
Query 907 GTGCAGGTAGCATCCTAAGAGTTGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 966
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTGCAGGTAGCATCCTTAGAGTCGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 1060
Query 967 CAGGAGATTTGTACGTATATCTTGATGTTGAAGATGTCCGGGGAATTCAAAGAGATGGCA 1026
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1061 CAGGAGATTTGTATGTATATCTTGATGTTGAAGATGTCCGGGGAATTGAAAGAGATGGCA 1120
Query 1027 TAAACCTTTTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCGGTTGTTA 1086
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1121 TAAACCTATTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCTGTTGTTA 1180
Query 1087 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1240
Query 1147 ATGTGCTGGTCCTGGCAAAGAAAGGAGTACCAAAACTGAATAGACCATCTATCCGCGGTG 1206
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1241 ATGTGCTAGTCCTGGCAAAGAAAGGAGTACCGAAACTGAATAGACCGTCTATCCGCGGTG 1300
Query 1207 ACCACTTGTTTACAGTCAAAGTTTCTATACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1266
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1301 ACCACTTGTTTACAGTCAAAGTTTCTGTACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1360
Query 1267 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGGTCACGAACTCGTGCTA 1326
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1361 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGCTCACGAACTCGTGCTA 1420
Query 1327 AGCCTCAGCAAACCAGTTCTCTGAGCAGTGCACCCAGTAGCTTAGAAAACAGGACAGATG 1386
||||||||||| ||||| ||||||||| |||||||||| ||| |||||||| || |||||
Sbjct 1421 AGCCTCAGCAACCCAGTACTCTGAGCACTGCACCCAGTGGCTCAGAAAACAAGAAAGATG 1480
Query 1387 AAGTT--G-AGGAAAATGAAGAAGCGGAGCAAGAAAACGACTTGTGGAAAAACATCAAAG 1443
||||| | |||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 1481 AAGTTAAGGAGGAAAATGAAGAACCGGAGCAAGAAAACTACTTGTGGAATAACATCAAAG 1540
Query 1444 ATTTTGCAGGGTCTGTCGCAAATGGAGCTCTGAAATGGCTGAGAGATAACCTCTAGAGAT 1503
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1541 AATTTGCAGGGTCTGTCGCAAATGGAGCTCTAAAATGGCTGAGAGATAACCTCTAGAGAT 1600
Query 1504 CCATCTTCAACTAAC 1518
|||||||||||||||
Sbjct 1601 CCATCTTCAACTAAC 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999614230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5