BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927599
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01590.2 | Symbols: | Galactose mutarotase-like superfamily... 1624 0.0
> AT3G01590.2 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:226066-228623 FORWARD LENGTH=1557
Length=1557
Score = 1624 bits (879), Expect = 0.0
Identities = 936/964 (97%), Gaps = 1/964 (0%)
Strand=Plus/Plus
Query 2 GTGAGCTTCTCGCC-AAAAAGGGATGCCTTTGAACTTAGGCAACGATGGCGATGGATCGT 60
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 337 GTGAGCTTGTGGCCAAAAAAGGGATGCCTTTGAACTTAGGCAACGATGGCGATGGGTCTT 396
Query 61 CCCGGATTATTTTGACTGAGCCTCGCGGATCAACTGCTGAGGTGCTTCTATTTGGAGGAC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 397 CCCGGATTATTTTGACTGAGCCTCGCGGATCTACTGCTGAGGTGCTTCTATTTGGAGGAC 456
Query 121 AAGTCATTTCTTGGAAAAACGAAAGGAGGGAAGAACTGCTTTATATGAGCACCAAGGCTC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 457 AAGTCATTTCTTGGAAAAATGAAAGGAGGGAAGAACTGCTTTATATGAGCAGCAAGGCTC 516
Query 181 AATATAAGCCACCCAAGGCGATCAGAGGAGGAATACCTGTTTGCTTTCCACAGTTTGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AATATAAGCCACCCAAGGCGATCAGAGGAGGAATACCTGTTTGCTTTCCACAGTTTGGAA 576
Query 241 ACTTTGGTGGACTTGAGCGACATGGATTTGTCCGGAACAAATTCTGGTCATATGATGAAG 300
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 577 ACTTTGGTGGACTTGAGCGACATGGATTTGCCCGGAACAAATTCTGGTCACATGATGAAG 636
Query 301 ATCCTTCGCCTCTTCCTCCTGCTAACAAACAGTCATCAGTTGATCTGATATTGAAGTCCA 360
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 637 ATCCTTCGCCTCTACCTCCTGCTAACAAACAATCATCTGTTGATCTGATATTGAAGTCCA 696
Query 361 CAGAAGATGACTTAAAGACCTGGCCGCATATTTTTGAACTCCGTATTCGAATTTCTATTA 420
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 697 CAGAAGATGACTTGAAGACCTGGCCGCATAGTTTTGAACTCCGTATTCGCATTTCTATTA 756
Query 421 GCCCTGGGAAGCTTACTTTGATCCCTCGTGTGAGGAACATTGACTCAAAGGCATTCTCCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GCCCTGGGAAGCTTACTTTGATCCCTCGTGTGAGGAACATTGACTCAAAGGCATTCTCCT 816
Query 481 TCATGTTTGCACTGCGAAACTACTTATATGTATCTGACATAAGTGAAGTACGAGTTGAGG 540
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 817 TTATGTTTGCACTGCGAAACTACTTATATGTATCTGACATAAGTGAAGTTCGAGTTGAGG 876
Query 541 GTTTGGAGACACTGGATTATCTAGACAACTTGATTGGTAAAGAAAGATTCACCGAGCAAG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 877 GTTTGGAGACACTGGATTATCTAGACAACTTGATTGGTAAAGAAAGATTCACTGAGCAAG 936
Query 601 CAGACGCGATTACCTTTGACGGGGAGGTCGATAGAGTGTACTTGAACACACCAACAAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CAGACGCGATTACCTTTGACGGGGAGGTCGATAGAGTGTACTTGAACACACCAACAAAGA 996
Query 661 TTGCGGTCATAGATCATGAGCGAAAGAGGACCATAGAGTTGCGAAAGGAAGGCATGCCCA 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 997 TTGCGGTCATAGATCATGAGCGAAAGAGGACCATCGAGTTGCGAAAGGAAGGCATGCCCA 1056
Query 721 ATGCAGTTGTGTGGAACCCCTGGGACAAAAAGGCAAAGACCATAGCTGATATGGGAGATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATGCAGTTGTGTGGAACCCCTGGGACAAAAAGGCAAAGACCATAGCTGATATGGGAGATG 1116
Query 781 AAGATTACAAAACAATGCTGTGTGTAGATTCTGGAGTAATCGAACCTCCGGTATTGTTAA 840
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1117 AAGATTACAAAACAATGCTTTGTGTAGATTCTGGAGTAATCGAACCTCTGGTATTGTTAA 1176
Query 841 AGCCACGTGAAGAGTGGAAAGGCAGACAAGAACTCTCCATAGTCTCATCAAGTTACTGCA 900
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1177 AGCCTCGTGAAGAGTGGAAAGGCAGACAAGAACTATCCATCGTCTCATCAAGTTACTGCA 1236
Query 901 GCGGACAGCTTGATCCACGCAAGGTTCTTTACGGAGATAACTGATACTTTTGGGGGATTA 960
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 1237 GCGGACAGCTTGATCCACGCAAGGTTCTTTACGGAGATATCTGATCCTTTTGGGGGTTTA 1296
Query 961 TCTT 964
||||
Sbjct 1297 TCTT 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47169864033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5