BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927692
Length=2756
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396012-399779 ... 4388 0.0
> AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396012-399779
REVERSE LENGTH=3300
Length=3300
Score = 4388 bits (2376), Expect = 0.0
Identities = 2636/2763 (95%), Gaps = 12/2763 (0%)
Strand=Plus/Plus
Query 1 GTTAAGTAGGA-GACGAAGATATGTCTGCAAAACTTCTGTATAACTTGTCAGATGAGAAT 59
|||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 367 GTTAAGTA-GAGGAAGAAGATATGTCTGCAAAACTTCTATATAACTTGTCAGATGAGAAT 425
Query 60 CCAAATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTCTTTTACCGGCAA 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 426 CCAAATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTGTTTTACCGGCAA 485
Query 120 CATTGTCCGGCGACACCAGTCACCGTCTCCGGCGATGTAGACAAGTCTTTGCCTCCAGGG 179
|||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 486 CATTGTCCCGCGACACCAGTCACCGTCTCCGGCGGCGCAGAGAAGTCTTTGCCTCCAGGG 545
Query 180 GAAAGAAGAGGTAGCGTCGGTGAAATCAACATGGAAAGTGATAAAGAAACGGAGAGGAGT 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 546 GAAAGAAGAGGTAGCGTCGGTGAAACCAACATGGAAAGTGATAAAGAAACGGAGAGGAGT 605
Query 240 AGTACCAAGAAGAAGAAGTCTGCAGCAAAGGAGAAGCATAGAGTCTCTTCTGAATCCTCT 299
|||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 606 AGTACCAAAAAGAAGAAGTCTGCAGCAAAAGAGAAGCATAGAGTCTCTTTTGAATCATCT 665
Query 300 TCGAGGCCTTCATTTTCGTCTTCTCCACGCTCCTCGAGCTTCTCGTCTGCAGAAGTCAGT 359
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 666 TCAAGACCTTCATTTTCGTCTTCTCCACGCTCCTCTAGCTTCTCGTCTGCAGAAGTCAGT 725
Query 360 ACCACAGCTTCTCAATTTGACCCGCCTGGTGAGAACCTGATCAGAGAACATCCCAATGGT 419
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 726 ACCACAGCTTCTCAATTTGACCAGCCTGGTGAGAATCTGATCAGAGAACAGCCCAATGGT 785
Query 420 GGCCTGATGATGCCGTATGATCTTAAGGAGCTTGTGAAAGGCTCTATTAATAGAGATATG 479
||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 786 GGCTTGATGATGCCGTATGATCTAAAGGAGCTTGTCAAAGGCTCTATTAATAGAGAAATT 845
Query 480 AGAACTAGAGGCGAAGAAGC-TGCCTTCACTCAGCAGCAGCAGCCCAATTCAGCTCGAAC 538
||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 846 AGAACTAGAGGTGAAGAAGCAT-CCTTCACTCAGCAGCAGCAGCCCATTTCAGCTCGAAG 904
Query 539 TAGCATGTTGCTTCTCAAAGAATCATCATTGCGTTCACCATATCGGAGTTCTAATGAGTG 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 905 TAGCATGTTGCTTCTCAAAGAATCATCATTGCGTTCACCATGTCGGAGTTCTAATGAGTG 964
Query 599 GAATGAAGGAAGAGGAATGGCTATGAAGTTTAAGGAAAGTCACCGGCTTTCTTATGATGA 658
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAATGAAGGAAGAGGAGCGGCTATGAAGTTTAAGGAAAGTCACCGGCTTTCTTATGATGA 1024
Query 659 GAGGGAGATAAGAAACAACGGGTTCAAGGTGGGTTCGAAGTTGAAAGAGACACCGAGGTT 718
||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 1025 GAGGGAGATGAGAAACAACGGATTCAGGGTGGGTTCAAAGTTGAAAGAGACACCGAGGTT 1084
Query 719 GTCGTTGGATAGTAGATCGAATTCCTTCAGGAGTCCGAGAGCAGATGCTGCGAGATCGAG 778
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1085 GTCGTTGGATAGTAGATCCAATTCCTTTAGGAGTCCGAGAGCAGATGCTGCGAGATCGAG 1144
Query 779 TTGTCCAGAGGAACCCGCAACAATGAATCACAGGAGATCAAGTTCGAGTGTTGTTGCTAA 838
|||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 1145 TTGTCCAGAGGAACCCGCAACAATGACTCACAGGAGATCGAGTTCTAGTGTTGTTGCCAA 1204
Query 839 ATTGATGGGTCTTGAAGTCATTGCAGACAATTCTGATACTGAACAGAGAAGAGAGAACCG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ATTGATGGGTCTTGAAGTCATTGCAGACAATTCTGATACTGAACAGAGAAGAGAGAACCG 1264
Query 899 GTTTTGTGACTCTCCAAGGCCAATGTCCAGAGTGGAA-C--CAGCTCTACAGAGATCTAG 955
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1265 GTTTTGTGACTCTCCAAGGCCAATGTCCCGAGTGGAACCAACAGCTCTACAGAGATCTAG 1324
Query 956 AAGCGTAGATTCGATCAAGAGGATACCTGCTTCAGCTGCTTCTAAGTTTCCAATGGAACC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AAGCGTAGATTCGATCAAGAGGATACCTGCTTCAGCTGCTTCTAAGTTTCCAATGGAACC 1384
Query 1016 AGCTCCATGGAAGCAAATGAAAGCAGGCGACTCTGCACTGACTGTATATGGTGAAATTCA 1075
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1385 AGCTCCATGGAAGCAAATGAAAGCAGGAGACTCTGCACTGACGGTATATGGTGAAATTCA 1444
Query 1076 GAAGCGACTTACACAGTTGGAGTTCAAAAAGTCGGGAAAAGATCTCAGAGCTCTTAAGCA 1135
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GAAGCGGCTTACGCAGTTGGAGTTCAAAAAGTCGGGAAAAGATCTCAGAGCTCTTAAGCA 1504
Query 1136 AATACTTGAGGCTATGGAGAAAACACAGCAGTTGATAGATGAAAGCAGAGATGACAGTAC 1195
|||||||||||||||||||||||| |||||| |||||||||||||||| || ||| ||||
Sbjct 1505 AATACTTGAGGCTATGGAGAAAACGCAGCAGCTGATAGATGAAAGCAGGGACGACGGTAC 1564
Query 1196 TCTGAATACAACCACTCTTTTGCAGAGAACTCACCAGCTAGTTCCAGCTGCAACAAGTCC 1255
||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||
Sbjct 1565 TCTGAGTACAACCACTCTTATGCAGAGAACTCACAAGCCAGTTTCAGCTGCAACAAGTCC 1624
Query 1256 TGCCAGGAACTTCAAATCTTCATCGATCGTTGTTATGAAATCCGCGGCTCCAGTTTCCAC 1315
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1625 AGCCAGGAACTTCAAATCTTCATCGATCGTTGTTATGAAATCTGCAGCTCCAGTTTCCAC 1684
Query 1316 CTCTCCGCTACCACAGAATGTCACCTTACCAAATGTCAAGGTTGGAAACTCTAGACAAAC 1375
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1685 CTCTCCGCTGCCACAGAATGTCACCCTACCAAATGTCAAGGTTGGAAACTCTAGACAAAC 1744
Query 1376 CCGGAAAGTCACCTCGGGGAAGCAGAACGCGATGGATTTAACCCCAAGGCCAGGCCTTTA 1435
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1745 CCGGAAAGTCACCTCAGGGAAGCAGAACGCAATGGATTTAACCCCAAGGCCAGGCCTTTA 1804
Query 1436 CAAGGGCCAACTCGATTCCACAAAGAGCAATAGCCCCAAAACATTACGGTCGAGGCAAGC 1495
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1805 CAAGGGCCAACTCGATTCCACGAAGAGCAATAGCCCAAAAACAGTACGGTCGAGGCAAGC 1864
Query 1496 TTCGGCTGCGGATGCTGGTTCCATGATCAAGTCAGGTAGAAGCCAACAGCACAGTGTCAG 1555
|| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1865 TTTGGCTGCAGATGCTGGTTCCATGACCAAGTCAGGTAGGAGCCAACAGCACAGTGTCAG 1924
Query 1556 CCCAAGAACGCAGCCAAAAAAGCTTGGGTTCGAGAAACAGTCTCGACCCACAACTCCAAA 1615
||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1925 CCCAAGAACACAGCCAAAAAAGCTCGGGTTCGAGAAACAGACTCGACCCACAACTCCAAA 1984
Query 1616 ATCAGAGCCAGGCAAAAGGCAACTCGGAAAGCAGCAAACAGAGGTAGCCTCCCCGAGTAG 1675
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1985 ATCAGAGCCAGGCAAAAGGCAACTCGGAAGGCAGCAAACAGAGGTAGCCTCTCCGAGAAG 2044
Query 1676 AAAACAGCTGATAAAACCTCACAGTACTCTTCAGCAACCTGATGACAGATTGAGCGATGC 1735
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2045 AAAACAGATGATAAAACCTCACAGTACTCTTCAGCAACCTGATGACCGATTAAGCGATGC 2104
Query 1736 AAGCAGCGACTTGAGGAGTCTAAGATCTGACAGCAACATAAGCTTGGGATCGAATGTTGA 1795
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2105 AAGGAGCGACTTGAGGAGTCTAAGGTCTGACAGCAACATAAGCTTGGGATCGAATGTTGA 2164
Query 1796 CATCGAGGTTACAAGCAGACATAGGCTGCAGAGGAACTGTGACTTCCCAGAGCAGCACAC 1855
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2165 CATCGAGGTTACAAGCAGACATAGGCTGGAGAGGAACTGTGACTTCCCAGAGCAGCACAC 2224
Query 1856 CCCAAAACAAAGGAGTCCGGACTTTGGAATCAAACAAGACAGACCATCCCTAAAACCTCT 1915
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2225 CCCCAAACAAAGGAGTCCAGACTTTGGAATCAAACAAGACAGACCGTCCCTAAAACCTCT 2284
Query 1916 GAAAGTTACCATTGAACAACCGAGCCCTGTTTCAGTTCTTGATGCAGTCTTCGACGAAGA 1975
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 GAAAGTTACCGTTGAACAACCGAGCCCTGTTTCAGTTCTTGATGCAGTCTTCGACGAAGA 2344
Query 1976 GGATTCACCGTCCCCTGTGAGGAAGATATCCCTTAGTTTTAAAGAGGAGGATGCTTTACG 2035
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2345 GGATTCACCGTCCCCTGTGAGGAAGATATCCCTTAGTTTTAAAGAGGAGGATGCCTTACG 2404
Query 2036 TTCTGAAGAATCTGAGTGGATAAACAAGCCTACCAGCTTCTGCAGATCCATACTATTTCC 2095
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2405 TTCTGAAGAATCTGAGTGGATAAACAAGCCTACCAGCTTCTGCAGATCCGTACCATTTCC 2464
Query 2096 TCACAGTAACCGGG-ACCCAACAAAGCGAAGTTCTGATCTTTTTGAATGCTTC-CCTGAA 2153
||| |||||||||| ||| || |||| ||||||||||| ||||||||||| | ||||||
Sbjct 2465 TCAGAGTAACCGGGGACC-AATGAAGCCAAGTTCTGATCATTTTGAATGCT-CACCTGAA 2522
Query 2154 GAAGGTGCAGACTTCAAAGGCGGCAACCACAAGTACATCTTAGAGATCTTGTTGGCCTCA 2213
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2523 GAAGGTGCAGACTTCAAAAGCGGCAACCACAAGTACATCTTAGAGATATTGTTGGCCTCA 2582
Query 2214 GGGATTCTAAGAGATCTTGAATACAGCATGATAAGCTTTCAGCTGCATCAAACGCGCCTC 2273
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2583 GGGATTCTAAGAGATCTTGAATACAGCATGATAAGCTTTCAGCTGCACCAAACGCGCCTC 2642
Query 2274 CCAATCAACCCTGGACTGTTCTTTATCCTAGAACAGAATAAGGCCAGCAATGTGACTCTA 2333
|| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 2643 CCGATCAACCCTGGACTGTTCTTTATCCTGGAACAGAACAAGGCCAGTAATGTGACTCTA 2702
Query 2334 CCGGACAACAAACACAGAGGCAGAGGATTCAGACAACAGCAGACAAATCCGACAGAGAAA 2393
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |
Sbjct 2703 CCGGACAACAAACACAGAGGTAGAGGATTCAGACAACAGCAGACAAACCCAACAGAGACA 2762
Query 2394 ATCAGGAGAAAACTCGTCTTCGACACCATTAATGAGATTTTAGCTCGGAAGTTCACTGCA 2453
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2763 ATCAGGAGAAAACTCGTCTTCGACACCGTTAACGAGATTTTAGCTCGGAAGTTCACTGCA 2822
Query 2454 GAAGGCTGTATCAAACCACGTTTAACCGCAAATCCACTaaaaaaaGTGGAGAAAATATCA 2513
|||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 2823 GAAGGCTGCATCAAACCACGTTTAATCGCAAATCCACTTAAAAAATTGGAGAAAATATCA 2882
Query 2514 AAAGAGGAGCAACTTTTGCAGACTCTGTGTTCAGAGATTGATAGGTTACAACAAAACAAC 2573
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 AAAGAGGAGCAACTTCTGCAGACTCTGTGTTCAGAGATTGATAGGTTACAACAAAACAAC 2942
Query 2574 TCAAACTGTATCTTGGAAGACGACGAGGAAGACATCATATGGGAGGACCTGCAAAGTCAA 2633
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2943 TCAAACTGTATCTTGGAGGACGACGAGGAAGACATCATATGGGAGGACCTGCAAAGTCAA 3002
Query 2634 GGCATGAACTTGAAGGAGTTTGAAGGAGAGACTCCAGGAATTGTGTTAGATATTGAGAGA 2693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3003 AGCATGAACTTGAAGGAGTTTGAAGGAGAGACTCCAGGAATTGTGTTAGATATTGAGAGA 3062
Query 2694 ATGATTTTCAGAGACTTGGTTAATGAAGTTTGCTTCTGCTAATTTTTT-ATGGTTATCAC 2752
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3063 ATGATTTTCAGAGACTTGGTTAATGAAGTTTGCTTCTGCTAATTTTTTTAAGGTTATCAG 3122
Query 2753 TTA 2755
|||
Sbjct 3123 TTA 3125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136905587447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5