BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927721
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02420.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1751 0.0
> AT3G02420.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0121 (InterPro:IPR005344);
Has 72 Blast hits to 71 proteins in 25 species: Archae
- 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:495885-498841
REVERSE LENGTH=1410
Length=1410
Score = 1751 bits (948), Expect = 0.0
Identities = 1045/1090 (96%), Gaps = 14/1090 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATCCCCAGCGGTTGAAGAA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 48 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATTCCCAGCGGTTGAAGAA 107
Query 61 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCTGATTACTGGTCCAA 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 108 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCCGATTACTGGTCCAA 167
Query 121 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 227
Query 181 ATTCTACCAACGCTACATCGATCCTGATCTTCTTGTGGAGCCTATGTCGACTTCATCTTC 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 228 ATTCTACCAACGCTACATCGATCCTGATCTTGTTGTGGAGCCTATGTCGACTTCATCTTC 287
Query 241 GTCTTCGCAATCCGCCA-G---A---C--CATCTG---CTACATCTGCATCTTCTAATGC 288
|||||| ||||| |||| | | | |||||| || || ||||||||||||||||
Sbjct 288 GTCTTCACAATCTGCCAGGCCAACTGCTACATCTGCATCTTCAACTGCATCTTCTAATGC 347
Query 289 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACATCTGGGCCATCTGC 348
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACCTCTGGGCCATCTGC 407
Query 349 TACGGCAGGTGCAAACCCAAGTTCAATGCGCTGGGATCAGCAGACGATTCAGTTTTCAGT 408
|||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 408 TACGACTGGTGCAACCCCAAGTTCAATGCGCTGGGATGAGCAGACGATTCAGTTTTCAGT 467
Query 409 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 527
Query 469 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCGTGCTCATCTCTATATTCCTT 528
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 528 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCATGCTCATCTCTATATTCCTT 587
Query 529 ATACTCCTTATACGGGAGGCCAAGAGCATGGAATATGCAAGGGCTACAAGTTTATTTTCA 588
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 588 ATACTCCTTATACGGGAGGCCAAGGGCATGGAATATGCAAGGGCTGCAAGTTTATTTTCA 647
Query 589 ATCAATTGTGGCAGCAAAGGATTTCATCTATTTCATCTACTGCCTTACATTCGTCACTTC 648
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 648 ATCAATTGTGGCAGCAAAGGATTTCATCTACTTCATCTACTGCCTTACATTCGTCACTTC 707
Query 649 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 767
Query 709 CAAGTTCTTGAGGCGTAACTTTGGTCGTTCCACTATATACAGAAAGTACTTGGAAGACCC 768
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 CAAGTTCTTGAGGCGTAACTTTGGTCGGTCCACTATATACAGAAAGTACTTGGAAGACCC 827
Query 769 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTTAACATTCT-GTCATCGCAGGCTGAGA 827
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 828 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTCAACAT-CTTGTCATCGCAGGCTGAGA 886
Query 828 TAGCCATTGGCTTCCTTCTGATCATCTCTCTACTCTCATGGCAACGCAACATTATACAGA 887
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 887 TAGCCATTGGCTTCCTTCTGATTATCTCTCTGCTCTCATGGCAACGTAACATTATACAGA 946
Query 888 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCGGGTTACC 947
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 947 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCTGGTTACC 1006
Query 948 ACCAGAGCACATGGAGCAAAATCGGGAGGACAGTGACTCCGATTATCCAGCGTTACGCTC 1007
|||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1007 ACCAGAGCACGTGGAGCAGAATAGGGAGGACGGTGACTCCGATTATCCAACGTTACGCTC 1066
Query 1008 CCTTCTTGAATACTCCGGTGAGTGCCGTTCAGAGATGGTGGTTCAGGTGATCAAAACAAA 1067
| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 1067 CTTTCTTGAATACTCCGGTCAGTGCCGTTCAGAGATGGTGGTTCAGGTGATAAAAAGAAA 1126
Query 1068 CAAAATGCAG 1077
||||||||||
Sbjct 1127 CAAAATGCAG 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5