BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927823
Length=517
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 791 0.0
> AT3G03170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G24890.1);
Has 184 Blast hits to 184 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:731891-732875
FORWARD LENGTH=792
Length=792
Score = 791 bits (428), Expect = 0.0
Identities = 488/516 (95%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 3 AGCGGCTTAGAAGAAAAAATGCACTATCAAGAACAGATGGAGTCTCTTATGTTGGGAGAA 62
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 158 AGCCGCTTAGAAGAAAAAATGCACTATCAAGAACAGATGGAGTCTCTTATGTTGGGTGAA 217
Query 63 GAACGCAGACGCGGAAACTACGTCAGAGACGCAGACTTGGACGCAGACGCAGAAGAAGGT 122
||||||||||||||||||||| |||||||| |||| | || |||||||| ||||||
Sbjct 218 GAACGCAGACGCGGAAACTACACCAGAGACGTAGAC---G-CG--GACGCAGATGAAGGT 271
Query 123 GTTAACTCTCCCTCTTCTTTTCCAAACTCTCCTGATGATTCGGACCGTCGCACTTCTTCT 182
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 272 GTTAACTCTCCCTCTTCTTTTCCAAACTCCCCTGATGATTCGGACCGTCGCAGTTCTTCT 331
Query 183 TCTTCTTCAAGGAGAGGATTGTCGAAACATTACAAAGGTAAATCACAATCGTTCACAACG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TCTTCTTCAAGGAGAGGATTGTCGAAACATTACAAAGGTAAATCACAATCGTTCACAACG 391
Query 243 TTGGCAGAAGCGCTAACTGTGGAAGATCTCGCTAAGCCCGAGAATCCATTCAACGCAAAG 302
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 392 TTGGCAGAAGCGCTAACTGTGGAAGATCTCGCGAAGCCTGAGAATCCATTCAACGCAAAG 451
Query 303 CTGAAGCAGCGACGAGAGAGCCCTCACTGTCGTAGATTATCCGGATGCGGCGGCGCTTCG 362
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 452 CTGAAGCAGCGACGAGAGAGCCCTCACTGTCGTAGATTATCAGGATGCGGCGGCGCATCG 511
Query 363 GAGCGAAATTTAAGTGGTC-ACGACGTTTTTCTCGCCGGAAACGATAGGCCGCAGCGACT 421
|||||||||||||||| || |||||||||||||||| || |||||||| |||| ||||||
Sbjct 512 GAGCGAAATTTAAGTG-TCCACGACGTTTTTCTCGCTGGGAACGATAGACCGCCGCGACT 570
Query 422 CTCCGGTAACAGACCGCCTCTGAGAGCCCAGACGCTCTCGGCGGCTCATATTTCGGCTTT 481
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTCCGGTAACAGACCGCCTCCGAGAGCCCAGACGCTCTCGGCGGCTCATATTTCGGCTTT 630
Query 482 GCTTACTCGAACCTAAACCGGAACAGAACCGGGTTT 517
||| ||||||||||||||||||| ||||||||||||
Sbjct 631 GCTCACTCGAACCTAAACCGGAAGAGAACCGGGTTT 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24715200324
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5