BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927841
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03310.1 | Symbols: ATLCAT3, LCAT3 | lecithin:cholesterol ac... 2357 0.0
AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 159 5e-38
> AT3G03310.1 | Symbols: ATLCAT3, LCAT3 | lecithin:cholesterol
acyltransferase 3 | chr3:778568-781580 REVERSE LENGTH=1635
Length=1635
Score = 2357 bits (1276), Expect = 0.0
Identities = 1363/1406 (97%), Gaps = 1/1406 (0%)
Strand=Plus/Plus
Query 1 CCGAAACCTGACCCGCTTCGATGGACTGGATTCCGTGTCCGTGCTGGGGAACCAACGACG 60
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 73 CCGAAACCTGACCCGCTTTGATGGGCTGGATTCCGTGTCCGTGCTGGGGAACCAACGACG 132
Query 61 ATGAAAACTCCGGCGAGGTGGCGGATCGTGATCCGGTGCTTCTAGTATCTGGAATAGGAG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 133 ATGAAAACGCCGGCGAGGTGGCGGATCGTGATCCGGTGCTTCTAGTATCTGGAATTGGAG 192
Query 121 GCTCTATTCTGCATTCTAAGAAGAAGGATTCAAAGTCTGAAATTCGGGTTTGGGTCCGAA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 193 GCTCTATTCTGCATTCTAAGAAGAAGAATTCAAAGTCTGAAATTCGGGTTTGGGTCCGAA 252
Query 181 TATTTCTCGCCAACCTTGCCTTTAAGCAGAGCCTCTGGTCTCTCTATAATCCCAAAACTG 240
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TATTTCTAGCTAACCTTGCCTTTAAGCAGAGCCTCTGGTCTCTCTATAATCCCAAAACTG 312
Query 241 GTTATACAGAGCCGTTGGATGATAATATTGAAGTATTGGTCCCTGATGATGACCATGGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GTTATACAGAGCCGTTGGATGATAATATTGAAGTATTGGTCCCTGATGATGACCATGGAC 372
Query 301 TCTATGCAATTGATATTCTAGATCCCTCCTGGTTTGTGAAGCTTTGTCACTTGACAGAGG 360
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 373 TCTATGCAATTGACATTCTAGATCCCTCTTGGTTTGTAAAGCTTTGTCACTTGACGGAGG 432
Query 361 TCTATCACTTTCACGATATGATAGAAATGCTGGTTGGATGCGGTTATAAGAAGGGGACTA 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTTATCACTTTCACGATATGATAGAAATGCTGGTTGGATGCGGTTATAAGAAGGGGACTA 492
Query 421 CATTATTCGGATATGGTTACGATTTCCGTCAAAGCAATAGGATCGATCTACTGATACTAG 480
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 493 CATTATTCGGTTATGGTTACGATTTCCGTCAAAGCAATAGGATCGATCTACTTATACTAG 552
Query 481 GTCTGAAGAAGAAGCTGGAAACTGCATATAAACGTTCAGGGGGGAGAAAAGTCACTATCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GTCTGAAGAAGAAGCTGGAAACTGCATATAAACGTTCAGGGGGGAGAAAAGTCACTATCA 612
Query 541 TCTCCCATTCAATGGGAGGAATTATGGTTTCATGTTTCATGTATCTCCATCCGGAGGCTT 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 613 TCTCCCATTCAATGGGAGGACTTATGGTTTCATGTTTCATGTATCTCCATCCGGAGGCAT 672
Query 601 TTTCCAAGTATGTAAATAAATGGATTACAATTGCAACACCTTTCCAAGGAGCACCAGGGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TTTCCAAGTATGTAAATAAATGGATTACAATTGCAACACCTTTCCAAGGAGCACCAGGGT 732
Query 661 GCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTT 792
Query 721 TTGTGTCAAGATGGACGATGCACCAACTGTTGGTCGAATGCCCATCTATATATGAGATGA 780
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTGTGTCACGTTGGACGATGCACCAACTGTTGGTCGAATGCCCATCTATATATGAGATGA 852
Query 781 TGGCAAATCCAGATTTTAAGTGGAAAAAGCAACCAGAGATTCGAGTTTGGCGTAAGAAAT 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TGGCAAATCCAGACTTTAAGTGGAAAAAGCAACCAGAGATTCGAGTTTGGCGTAAGAAAT 912
Query 841 CTGAAAACGACGATGATACTTCTGTAGAACTGGAATCATTTGGCCTAATCGAGAGTATTG 900
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 CTGAAAACGACGTTGATACTTCTGTAGAACTGGAATCATTTGGCTTAATCGAGAGTATTG 972
Query 901 ATCTATTCAACGATGCATTGAAAAATAACGAGCTAAGCTACGGTGGGAACAAAATAGCTT 960
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 973 ATCTATTCAACGATGCATTAAAAAATAACGAGCTAAGCTATGGTGGGAATAAAATAGCTT 1032
Query 961 TGCCCTTTAACTTTGCTATCCTCGACTGGGCGGCTAAGACGAGAGAAATTCTCAACAAAG 1020
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1033 TGCCCTTTAACTTTGCTATCCTCGACTGGGCTGCTAAGACAAGAGAAATTCTCAACAAAG 1092
Query 1021 CGCAACTTCCTGATGGAGTTTCCTTCTATAACATTTACGGAGTGTCACTTGATACACCCT 1080
||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||
Sbjct 1093 CGCAACTTCCTGATGGAGTGTCCTTCTATAACATATATGGAGTGTCACTTAATACACCCT 1152
Query 1081 TTGATGTTTGTTATGGCACAGAGACTTCTCCAATAGACGATCTGTCTGAAATATGTCAAA 1140
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1153 TTGATGTTTGTTATGGCACAGAGACTTCTCCGATAGACGATTTGTCTGAAATATGTCAAA 1212
Query 1141 CTATGCCTGAGTATACATATGTAGATGGAGATGGAACTGTACCTTCTGAATCAGCTGCGG 1200
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1213 CTATGCCTGAGTATACATATGTAGATGGAGATGGAACTGTCCCTGCTGAATCAGCTGCAG 1272
Query 1201 CTGCACAGTTTAAAGCAGTTGCAAGCGTAGGAGTTTCTGGTAGCCACCGCGGGCTTCTCC 1260
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1273 CTGCTCAGTTTAAAGCAGTTGCTAGCGTAGGAGTTTCGGGTAGCCACCGCGGGCTTCTCC 1332
Query 1261 GTGATAAAAGAGTGTTTGAGCTCATTCAACAATGGTTAGGAGTTGAGCCCAAGAAGGCTA 1320
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTGATGAAAGAGTGTTTGAGCTCATTCAACAATGGTTAGGAGTTGAGCCCAAGAAGGCTA 1392
Query 1321 AACGGAAGCATTTAAGGACTCACAAAGTTGTTGATTCTGGCCAAGTCCAAAGCCTAGTAA 1380
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1393 AACGGAAGCATTTAAGGACTCACAAAGTAGTTGATTCTGGTTAAGTCCAAAGCCTAGTAA 1452
Query 1381 ACTAAAAAGATCTTGTTTGAATAAGT 1406
||||||| ||||||||||||||||||
Sbjct 1453 ACTAAAA-GATCTTGTTTGAATAAGT 1477
> AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: DegP protease 7 (TAIR:AT3G03380.1). |
chr3:797254-799148 REVERSE LENGTH=1171
Length=1171
Score = 159 bits (86), Expect = 5e-38
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 241 GTTATACAGAGCCGTTGGATGATAATATTGAAGTATTGGTCCCTGATGATGACCATGGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GTTATACAGAGCCGTTGGATGATAATATTGAAGTATTGGTCCCTGATGATGACCATGGAC 361
Query 301 TCTATGCAATTGATATTCTAGATCCCTCCTGG 332
||||||||||||| |||||||||||||| |||
Sbjct 362 TCTATGCAATTGACATTCTAGATCCCTCTTGG 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5