BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927863
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03470.1 | Symbols: CYP89A9 | cytochrome P450, family 87, su... 2508 0.0
> AT3G03470.1 | Symbols: CYP89A9 | cytochrome P450, family 87,
subfamily A, polypeptide 9 | chr3:824552-826437 REVERSE LENGTH=1768
Length=1768
Score = 2508 bits (1358), Expect = 0.0
Identities = 1515/1590 (95%), Gaps = 14/1590 (1%)
Strand=Plus/Plus
Query 1 TTTAATTTGAAG-AAGA--A-CAACAATGGAGATCACCACTCTCATATTCCTTATCATCT 56
||| |||||||| |||| | |||||||||||||||||||| |||||||||| ||||| |
Sbjct 67 TTTGATTTGAAGCAAGAGGAGCAACAATGGAGATCACCACTATCATATTCCTCATCATAT 126
Query 57 CCTCTCTCACATTCGCCATCTTCCTTAAACTCATCTTCTTCTCCTCAACTCACAAACTCC 116
|||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 127 CCTCTCTCACCTTCTCCATCTTCCTTAAACTCATCTTCTTCTTCTCAACTCACAAACTCC 186
Query 117 CACCGGGACCACCTCGTTTTCCGGTCATCGGAAACATAATCTGGCTTAAGAAAAACAACT 176
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 187 CACCGGGACCACCTCGTTTTCCGGTCATCGGAAACATCATCTGGCTTAAGAAAAACAACT 246
Query 177 TCTCTGATTTTCAAGGTGTTCTCCGTGACTTAGCCTCCCGTCACGGACCAATCATAACCC 236
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 247 TCTCCGATTTCCAAGGCGTTCTCCGTGACTTAGCCTCCCGTCACGGACCAATCATAACAC 306
Query 237 TCCACGTAGGCTCAAAACCTTCCATCTGGGTCACAGAGAGATCACTCGCTCACCAAGCCC 296
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 307 TCCACGTAGGCTCCAAACCTTCCATCTGGGTCACAGACAGATCACTCGCTCACCAAGCCC 366
Query 297 TCGTCCAAAACGGTGCCGTTTTCTCCGACCGTTCTCTCGCTCTCCCTACCACCAAAGTCA 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TTGTCCAAAACGGTGCCGTTTTCTCCGACCGTTCTCTCGCTCTCCCTACCACCAAAGTCA 426
Query 357 TCACCAGCAACCAACACGACATCCACTCCTCCGTCTACGGCTCTCTCTGGAGAACCCTCC 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 427 TCACCAGCAACCAACACGACATCCACTCCTCCGTCTATGGCTCTCTCTGGAGAACCCTCC 486
Query 417 GCCGCAACCTCACCTCCGAAATCCTCCAACCATCGCGCGTGAAAGCACACGCGCCGTCGA 476
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 487 GCCGCAACCTCACCTCCGAAATCCTCCAGCCCTCGCGCGTGAAAGCACACGCGCCGTCGA 546
Query 477 GGAAATGGTCTCTCGAGATCCTCGTGGATCTGTTCGAAACAGAGCAGAGAGAGAAAGGAC 536
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 547 GGAAATGGTCTCTCGAGATTCTCGTGGATCTGTTCGAGACAGAGCAGAGAGAGAAAGGAC 606
Query 537 ATGTCTCCGACGCTTTAGATCATCTCCGTCACGCGATGTTTTATTTATTGGCTCTGATGT 596
|| |||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 607 ATATCTCCGACGCTTTAGATCATTTACGTCACGCTATGTTTTATTTGTTGGCTCTGATGT 666
Query 597 GTTTCGgagagaagctgagaagagaagagatcagagagatcgaagaagCTCAGTACCAAA 656
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTTCGGAGAGAAACTGAGAAAAGAAGAGATCAGAGAGATCGAAGAAGCTCAGTACCAAA 726
Query 657 TGCTCATAAGCTACACCAAGTTCAGCGTCCTCAACATCTTCCCAAGCGTAACCAAGTTCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGCTCATAAGCTACACCAAGTTCAGCGTCCTCAACATCTTCCCAAGCGTAACCAAGTTCT 786
Query 717 TGCTCCGGCGAAAATGGAAAGAGTTCTTAGATCTAAGGAAATCTCAAGAAAACGTTATAC 776
||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 787 TGCTCCGGCGAAAATGGAAAGAGTTTTTAGAACTAAGGAAATCTCAAGAGAGCGTTATAC 846
Query 777 TCCGATACGTGAACGCAAGGAGCAAAGAAACCACCGGAGATGTTCTCTGTTACGTCGATA 836
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTCGATACGTGAACGCAAGAAGCAAAGAAACCACCGGAGATGTTCTCTGTTACGTCGATA 906
Query 837 CGCTACTGAATCTAGAGATTCCGATGGAGGAGGATAAAGAAGGAGGGAAGAAGAGGAAAC 896
|||| |||||||| ||||| |||| ||||||| | || ||||||||||||||||||||||
Sbjct 907 CGCTGCTGAATCTTGAGATCCCGACGGAGGAG-A-AA-GAAGGAGGGAAGAAGAGGAAAC 963
Query 897 TGAGTGAATCGGAGATCGTGAGTCTGTGTTCGGAGTTTCTTAACGCAGCTACGGATCCAA 956
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGAGTGACTCGGAGATCGTGAGTCTGTGTTCGGAGTTTCTTAACGCAGCTACGGATCCAA 1023
Query 957 CGGCGACGGCGATGCAGTGGATCTTGGCGATCATGGTGAAGTATCCAGAGATACAGAGGA 1016
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1024 CGGCGACGTCGATGCAGTGGATCATGGCGATCATGGTGAAGTATCCAGAGATACAGAGGA 1083
Query 1017 AAGTATACGAAGAAATGAAGAGTGTGTTGTTCGCCGgagaagaagaggaaagagaagaga 1076
|||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 1084 AAGTATACGAGGAAATGAAGACTGTGTT---CGCCGGAGAAGAAGAAGAAAGAGAAGAGA 1140
Query 1077 tcagagaagagGATTTGGGGAAGTTGAGTTACCTCAAAGCTGTGATCTTGGAGTGTTTAA 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 TCAGAGAAGAGGATTTGGGGAAGTTGAGTTACCTCAAAGCTGTGATCTTGGAGTGTCTAA 1200
Query 1137 GAAGACACCCACCTGGTCATTACTTGTCTTACCATAAGGTCACACACGACACCGTTTTGG 1196
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAAGACACCCTCCTGGTCATTACTTGTCTTACCATAAGGTCACACACGACACCGTTTTGG 1260
Query 1197 GTGGATTCCTCGTTCCACGCCAAGGTACTATAAACTTCATGGTAGGAGAAATGGGCCGGG 1256
||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 GTGGATTTCTCATTCCGCGCCAAGGTACTATAAACTTTATGGTAGGAGAAATGGGCCGGG 1320
Query 1257 ACCCAAAAATATGGGAAGATCCTCTAACGTTCAAGCCAGAAAGATTTATAGAGAACGGAG 1316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 ACCCAAAAATATGGGAAGATCCTCTAACGTTCAAGCCAGAAAGATTTCTAGAGAACGGAG 1380
Query 1317 AAGCCTATGATTTCGATATGACGGGAACTCGCGAGATCAAGATGATGCCGTTTGGAGCGG 1376
|||| | |||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1381 AAGCATGTGATTTTGATATGACGGGAACTCGCGAGATTAAAATGATGCCGTTTGGAGCGG 1440
Query 1377 GACGACGGATGTGTCCCGGTTACGCCCTTTCGTTGCTTCACCTTGAATATTATGTGGCCA 1436
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1441 GACGACGGATGTGTCCCGGCTACGCGCTTTCGTTGCTTCACCTGGAATATTATGTGGCCA 1500
Query 1437 ATTTGGTTTGGAAATTCGAGTGGAAATGTGTGGAAGGTGAAGAAGTTGATCTATCCGAGA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATTTGGTTTGGAAATTCGAGTGGAAATGTGTGGAAGGTGAAGAAGTTGATCTATCCGAGA 1560
Query 1497 AGCAACAATTCATCACAATGGTCATGAAAAACCCTTTCAAGGCAAATATTTATCCAAGGA 1556
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1561 AGCAACAGTTCATCACAATGGTCATGAAAAACCCTTTCAAAGCAAATATTTATCCAAGGA 1620
Query 1557 GAAGAAAGTGATATTTGCTTATTGTTATAT 1586
||| | ||||||||||||| |||| ||||
Sbjct 1621 GAA-A--GTGATATTTGCTT-TTGTCATAT 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5