BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927952

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04140.1 | Symbols:  | Ankyrin repeat family protein | chr3:...   246    5e-65


> AT3G04140.1 | Symbols:  | Ankyrin repeat family protein | chr3:1086877-1089229 
FORWARD LENGTH=2280
Length=2280

 Score =  246 bits (133),  Expect = 5e-65
 Identities = 149/157 (95%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  39    AGTCCAGACAGAGAGAGTTTTGATGGAATCAGTGAGTGTTCGACTGAAATCTCGACGCAT  98
             ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct  1564  AGTCCAGACAGAGAGAGTTTTGATGGAATTAGTGAGTGTTCAACTGAAATTTCGACGCAT  1623

Query  99    TCGAAACGCAAACGCCGCGGTGGTGGCGGTACAGGAGCGCGTCTTAAGCTTCTTTTACGG  158
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1624  TCGAAACGCAAACGCCGCGGTGGCGGCGGTACAGGAGCGCGTCTTAAGCTTCTTTTACGG  1683

Query  159   TGGGCGAAGAGGGAAGAATCGGAGGAGAATCGCCGTT  195
             |||||||||||||||||||| || || ||||| ||||
Sbjct  1684  TGGGCGAAGAGGGAAGAATCAGAAGAAAATCGTCGTT  1720



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9802211055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5