BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927953
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04140.1 | Symbols: | Ankyrin repeat family protein | chr3:... 375 8e-104
> AT3G04140.1 | Symbols: | Ankyrin repeat family protein | chr3:1086877-1089229
FORWARD LENGTH=2280
Length=2280
Score = 375 bits (203), Expect = 8e-104
Identities = 231/245 (94%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 1 GTCGTGTTCCTCTCAGAGAGATTTATTCGCCGTCGTCTTGTAACAAAGGAAAAGCGTTTC 60
|||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||
Sbjct 1742 GTCGTGTTCCTCTCAGAGAGATGTATTCTCCGTCGTCTTGTAGCAGAGGAAAAGCGTTTC 1801
Query 61 CGATGAGAACAGAGAGTGGTGATCTCCCGAGTTTATCGGTGAGGCTGAAATTCACACAAG 120
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1802 CGATGAGAACAGAGAGTGGTGATCTTCCGAGTTTATCGGTGAGACTTAAATTCACACAAG 1861
Query 121 GGTTAATGAAAGGAGTCGTGGTTCAGGAATCTCCGAGGTTCGTGTTTTCGCCTCCCGCGG 180
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1862 GGTTAATGAAAGGAGTGGTGGTTCAGGAATCTCCGAGGTTCGTGTTTTCTCCTCCGGCTG 1921
Query 181 TATCCGATTACTCTCGAGCTCCGTCGTCGGCTTGTTCGTCACCGTTTCAGACGGTTTCTT 240
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 1922 TATCCGATTACTCTCGAGCTCCGTCGTCGGCTTGTTCGACGCCGTTTCAGACGTTTTCTT 1981
Query 241 CGGAA 245
|||||
Sbjct 1982 CGGAA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12868543744
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5