BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928039
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04790.1 | Symbols: | Ribose 5-phosphate isomerase, type A ... 1421 0.0
> AT3G04790.1 | Symbols: | Ribose 5-phosphate isomerase, type
A protein | chr3:1313316-1315243 FORWARD LENGTH=1928
Length=1928
Score = 1421 bits (769), Expect = 0.0
Identities = 843/878 (96%), Gaps = 8/878 (1%)
Strand=Plus/Plus
Query 1 ACCATTCTCAA---TC-CTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCCCACCTT 56
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 26 ACCATTCTCAATCCTCTCTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCTCACCTT 85
Query 57 ACGCTACGCACTCCTTCTATTTCCCTACGCAGCACTGGCTCTTCTCCTAGAACCTCCGTT 116
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 86 ACGCTACGCACTCCTTCTATTGCCCTACGCAGCACTGGCTCTTCTCCTCGAACCTCCGTT 145
Query 117 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 205
Query 177 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGAATGGTTCTAGGTCTCGGAACCGGATCC 236
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 206 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGGATGGTTCTAGGGCTCGGAACCGGATCC 265
Query 237 ACCGCAGCTTTCGCCGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 ACCGCAGCTTTCGCTGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 325
Query 297 ATTGTTGGTATCCCAACGTCCAAACGAACGGAGGAACAAGCACGATCGTTAGGGATTCCT 356
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 326 ATTGTCGGTATCCCAACGTCGAAACGAACGGAGGAACAAGCACGGTCGTTAGGGATTCCT 385
Query 357 CTTGTTGCGTTAGATACGCATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 416
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CTTGTTGGGTTAGATACACATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 445
Query 417 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGGGAGAAAATGGTG 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 446 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGTGAGAAAATGGTG 505
Query 477 GAAGCTGTGGCTGAGAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAAGCTGTGGCTGACAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 565
Query 537 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 625
Query 597 ATTAGATTGCAGGATCTGTTTAAGGAATTTGGATGTGA-TGCTAAGCTTAGAGTTGATGG 655
||||||||||| || || || ||||||||||||||||| | | |||||||||||||||||
Sbjct 626 ATTAGATTGCAAGACCTCTTCAAGGAATTTGGATGTGAAT-CAAAGCTTAGAGTTGATGG 684
Query 656 AGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAC 744
Query 716 TCCTTTGAAGGATGGATTCGCGGCGGCGAAAGAGATCGGCAAGTTTCAAGGAGTGGTGGA 775
||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 745 TCCTTTGAAGGATGGATTCGCTGCGGCTAAAGAGATTGGGAAGTTTCAAGGAGTGGTGGA 804
Query 776 GCATGGTCTGTTTCTAGGAATGGCTACTTCTGTGATTATCGCTGGAAAGAATGGTGTTGA 835
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 805 GCATGGTCTGTTTCTCGGAATGGCTACTTCTGTCATTATCGCTGGAAAGAATGGCGTTGA 864
Query 836 AGTTATGACCAAGTGAGGTTCAAAA-TTCAATCTTTCT 872
|||||||||||||||||||| |||| ||||||||||||
Sbjct 865 AGTTATGACCAAGTGAGGTT-AAAAGTTCAATCTTTCT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5