BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928085
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05060.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 2628 0.0
> AT3G05060.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr3:1412867-1415966 REVERSE LENGTH=2016
Length=2016
Score = 2628 bits (1423), Expect = 0.0
Identities = 1562/1630 (96%), Gaps = 6/1630 (0%)
Strand=Plus/Plus
Query 1 AGCTTGAGAGTTTTGTGAAGATGGTCTTAGTGCTATTCGAGACAGCGGCTGGTTTTGCCC 60
||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 88 AGCTTAAGAGTTTTGTGAAGATGGTCTTAGTGCTATACGAGACAGCGGCGGGGTTTGCCC 147
Query 61 TCTTTAAAGTGAAAGATGAAGGAAAGATGGCTAACGTTGAGGATTTGTGTAAAGAGTTCG 120
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 148 TCTTTAAAGTTAAAGATGAAGGAAAGATGGCTAACGTCGAGGATTTGTGTAAAGAGTTCG 207
Query 121 ACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAAGTTTGACAACA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 208 ACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAAGTTTGACAATA 267
Query 181 CATCTGAAGCTCTCGAAGCTGTGGCTAAGTTGCTTGAGGGAGCTCCAAGCAAAGGTCTGC 240
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 268 CATCTGAAGCTCTCGAAGCTGTGGCTAAATTGCTGGAGGGAGCTCCAAGCAAAGGTCTGC 327
Query 241 GCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTAGCTGTTGCTGATTCAAAGCTTG 300
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 328 GCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTGGCTGTGGCTGATTCAAAGCTTG 387
Query 301 GGAATGTGATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGCTGTTATGGAGC 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GGAATGTTATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGCTGTTATGGAGC 447
Query 361 TTCTACGAGGAGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGGGTGATCAAGACT 420
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TTCTACGTGGTGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGGGTGATCAAGACT 507
Query 421 TGGCACCTATGAGCTTGGGTCTGTCTCACAGTCTTGCTAGATATAAGCTAAAGTTTAGTT 480
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 508 TGGCTCCTATGAGCTTGGGTCTGTCTCACAGTCTCGCCAGATATAAGCTAAAGTTTAGTT 567
Query 481 CTGACAAGGTGGATACCATGATTATCCAAGCTATCGGTTTACTTGATGATCTTGACAAAG 540
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 568 CTGACAAGGTGGATACCATGATTATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAG 627
Query 541 AACTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCATTTTCCCGAGCTTG 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AGCTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCATTTTCCCGAGCTTG 687
Query 601 CTAAGATCATATCAGACAATATCCTATATGCCAAATCTGTTAAATTGATGGGAAACAGAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 688 CTAAGATCATATCAGACAATATCCTATATGCCAAATCTGTTAAATTGATGGGAAACCGAG 747
Query 661 TTAATGCTGCAAAGCTAGACTTCTCCGAGATCTTAGCGGATGAAATTGAGGCAGATCTCA 720
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 748 TTAATGCTGCTAAGCTAGACTTCTCCGAGATCTTAGCAGATGAAATTGAGGCAGATCTTA 807
Query 721 AGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGACCTAGACTTGTTGCACATCC 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 808 AGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGACTTAGACTTGTTGCACATCC 867
Query 781 GTGAACTCTGTGACCAGGTTCTTTCTCTTTCTGAGTACAGAGCTCAGCTTTACGATTACC 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 GTGAACTCTGTGACCAGGTTCTCTCTCTTTCTGAGTACAGAGCTCAGCTTTACGATTACC 927
Query 841 TGAAGAGCAGAATGCACACAATTGCTCCCAATCTGACTGCCCTTGTTGGAGAGCTAGTTG 900
| |||||||||||| |||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 928 TAAAGAGCAGAATGAACACTATTGCTCCCAATCTGACTGCCCTGGTAGGAGAGCTTGTTG 987
Query 901 GTGCCCGTCTGATTTCTCATGGAGGTAGTTTATTGAACCTCTCCAAGCAACCTGGGAGCA 960
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GTGCTCGTCTTATTTCCCATGGAGGTAGTTTATTGAACCTCTCCAAGCAACCTGGGAGCA 1047
Query 961 CGATTCAGATACTCGGAGCTGAAAAAGCTCTCTTTAGAGCTCTTAAGACAAAACACGCCA 1020
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CGGTTCAGATACTCGGAGCCGAAAAAGCTCTCTTTAGAGCTCTTAAGACAAAACACGCCA 1107
Query 1021 CACCCAAGTACGGTTTGATTTACCACGCATCTGTGGTTGGTCAAGCAGCACCAAAGCACA 1080
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1108 CACCCAAGTACGGTTTGATTTTTCACGCATCTCTGGTTGGTCAAGCAGCACCAAAGCACA 1167
Query 1081 AGGGAAAGATCTCGCGGTCATTAGCTGCTAAAACTGTTCTTGCTATTAGGGTTGATGCTC 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGGGAAAGATCTCGCGGTCTTTAGCTGCTAAAACTGTTCTTGCTATTAGGGTTGATGCTC 1227
Query 1141 TTGGTGATGGCCAGGATAGCACTATGGGACTTGAGAACCGAGCTAAGCTTGAAGCGCGGT 1200
|||||||| |||| |||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1228 TTGGTGATAGCCAAGATAACACTATGGGCCTTGAAAACCGAGCTAAGCTTGAAGCGCGGT 1287
Query 1201 TGAGAAATCTTGAAGGAAAAGATTTAGGACGTCTGTCTGGTTCAGCTAAAGGCAAACCTA 1260
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1288 TGAGAAATCTTGAAGGAAAAGATTTAGGTCGTCTGTCTGGTTCATCTAAAGGCAAACCTA 1347
Query 1261 AGATTGAAGTCTATAACAAGGATAAAAAGATGGGATCTGGCGGTCTTATCACTCCTGCTA 1320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1348 AGATTGAAGTCTATAACAAGGATAAAAAGATGGGATCAGGCGGTCTTATCACTCCTGCTA 1407
Query 1321 AGACTTACAACACTGCTGCAGATTCTCTTCTTGGGGAATCCTCGGCTAAATCTGAGGAGC 1380
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1408 AGACTTACAACACTGCTGCAGATTCTCTTCTTGGGGAAACCTCAGCTAAATCTGAGGAGC 1467
Query 1381 CATCgaagaagaaagataagaaaaagaagaagaaggtagaagaagaggaacccgaaaagg 1440
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1468 CATCAAAGAAGAAAGATAAGAAAAAGAAGAAGAAGGTAGAAGAAGAGAAACCCGAAGAGG 1527
Query 1441 aggagccatcaaagaagaagaagaagaagaaagctgaagcagaaactgaagccgtag-ag 1499
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1528 AAGAGCCATCAGAGAAAAAGAAGAAGAAGAAAGCTGAAGCAGAAACTGAAGCCGTAGTAG 1587
Query 1500 -g-ttgcaaaggaggagaagaagaacaa---gaagaagagaaagcatgaggaagaagaaa 1554
| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1588 AGGTTGCAAAGGAGGAGAAGAAGAAGAATAAGAAGAAGAGAAAGCATGAGGAAGAAGAAA 1647
Query 1555 caactgagacaccagccaagaagaaagataagaaagagaagaaaaagaagagcaaggact 1614
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1648 CAACGGAGACACCAGCCAAGAAGAAGGATAAGAAAGAGAAGAAAAAGAAGAGTAAGGACT 1707
Query 1615 gagggagaga 1624
||||||||||
Sbjct 1708 GAGGGAGAGA 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5