BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928205
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05930.1 | Symbols: GLP8 | germin-like protein 8 | chr3:1770... 1129 0.0
AT3G05932.1 | Symbols: | Potential natural antisense gene, loc... 808 0.0
> AT3G05930.1 | Symbols: GLP8 | germin-like protein 8 | chr3:1770337-1771409
FORWARD LENGTH=926
Length=926
Score = 1129 bits (611), Expect = 0.0
Identities = 669/698 (96%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 2 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCATATATTCGTCACCTTCATGC 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 21 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCCTATATTCGTCACCTTCATGC 80
Query 62 TCGTGGCCGCCCACATGGCCATCGCCGATACAAACATGCTTCAAGATTTTTGTGTAGCTG 121
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 81 TCGTGGCCGCCCACATGGCCCTCGCCGATACAAATATGCTTCAAGACTTTTGTGTTGCTG 140
Query 122 ATCTCTCCAACGGTGTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACAC 181
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATCTCTCCAACGGTTTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACAC 200
Query 182 CAGAAGACTTCTACTTCGTAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCCACAATGG 241
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 CAGAAGACTTCTACTTCATAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCTTCAATGG 260
Query 242 GCTCAGCTGTTACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTATGGGAGTCT 301
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 261 GCTCAGCTGTTACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTCTGGGAGTCT 320
Query 302 CCATCTCTCGGATCGACTACGCACCCGGCGGACTTAACCCGCCCCATCTTCACCCAAGAG 361
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 321 CCATCTCTCGGATCGACTACGCACCTGGCGGACTTAACCCACCACATCTTCACCCAAGAG 380
Query 362 CTTCCGAAGCCATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTGCCG 421
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 381 CCTCTGAAGCCATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTACCG 440
Query 422 GGAAACTCATCTCCAAACACGTCAACAAAGGAGACGTTTTTGTTTTCCCCAAAGCTCTCC 481
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 441 GGAAACTCATCTCCAAACACGTCAACAAAGGAGACGTTTTCGTTTTCCCCAAAGCTCTCC 500
Query 482 TCCATTTCCAGCAGAACCCTAACAACGCTCCAGCATCCGTTCTCGCTGCTTTCGATAGTC 541
||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |
Sbjct 501 TCCATTTCCAGCAGAACCCTAACAAAGCTCCTGCTTCCGTCCTCGCTGCTTTCGATAGCC 560
Query 542 AGCTTCCCGGGACTCAAGTTGTTGGACCTTCTCTGTTTGGTGCTAACCCACCGATTCCTG 601
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 561 AGCTTCCCGGGACTCAAGTTGTTGGACCATCTCTGTTTGGTTCTAACCCACCGATTCCTG 620
Query 602 ATGACCTGCTTGCCAAGGCGTTCGGAGTTGGAGCACCAGAGATTCAGAAGATTAAGGGCA 661
||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
Sbjct 621 ATGACCTGCTTGCCAAGGCGTTCGGGGCTGCAGCACCAGAGATTCAGAAGATTAAGGGAA 680
Query 662 AATTCCCACCAAAGAAATAAATAGGTTTCAGACCAGAG 699
||||||||||||||||||||||| ||||||||||||||
Sbjct 681 AATTCCCACCAAAGAAATAAATAAGTTTCAGACCAGAG 718
> AT3G05932.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT3G05930 | chr3:1770279-1771716 REVERSE
LENGTH=1159
Length=1159
Score = 808 bits (437), Expect = 0.0
Identities = 475/494 (96%), Gaps = 0/494 (0%)
Strand=Plus/Minus
Query 133 GGTGTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACACCAGAAGACTTC 192
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GGTTTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACACCAGAAGACTTC 744
Query 193 TACTTCGTAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCCACAATGGGCTCAGCTGTT 252
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 743 TACTTCATAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCTTCAATGGGCTCAGCTGTT 684
Query 253 ACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTATGGGAGTCTCCATCTCTCGG 312
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 683 ACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTCTGGGAGTCTCCATCTCTCGG 624
Query 313 ATCGACTACGCACCCGGCGGACTTAACCCGCCCCATCTTCACCCAAGAGCTTCCGAAGCC 372
|||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 623 ATCGACTACGCACCTGGCGGACTTAACCCACCACATCTTCACCCAAGAGCCTCTGAAGCC 564
Query 373 ATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTGCCGGGAAACTCATC 432
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 ATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTACCGGGAAACTCATC 504
Query 433 TCCAAACACGTCAACAAAGGAGACGTTTTTGTTTTCCCCAAAGCTCTCCTCCATTTCCAG 492
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 503 TCCAAACACGTCAACAAAGGAGACGTTTTCGTTTTCCCCAAAGCTCTCCTCCATTTCCAG 444
Query 493 CAGAACCCTAACAACGCTCCAGCATCCGTTCTCGCTGCTTTCGATAGTCAGCTTCCCGGG 552
|||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||
Sbjct 443 CAGAACCCTAACAAAGCTCCTGCTTCCGTCCTCGCTGCTTTCGATAGCCAGCTTCCCGGG 384
Query 553 ACTCAAGTTGTTGGACCTTCTCTGTTTGGTGCTAACCCACCGATTCCTGATGACCTGCTT 612
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 383 ACTCAAGTTGTTGGACCATCTCTGTTTGGTTCTAACCCACCGATTCCTGATGACCTGCTT 324
Query 613 GCCAAGGCGTTCGG 626
||||||||||||||
Sbjct 323 GCCAAGGCGTTCGG 310
Score = 220 bits (119), Expect = 1e-56
Identities = 129/134 (96%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 2 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCATATATTCGTCACCTTCATGC 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1081 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCCTATATTCGTCACCTTCATGC 1022
Query 62 TCGTGGCCGCCCACATGGCCATCGCCGATACAAACATGCTTCAAGATTTTTGTGTAGCTG 121
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1021 TCGTGGCCGCCCACATGGCCCTCGCCGATACAAATATGCTTCAAGACTTTTGTGTTGCTG 962
Query 122 ATCTCTCCAACGGT 135
||||||||||||||
Sbjct 961 ATCTCTCCAACGGT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5