BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928272
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)... 2475 0.0
> AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1956409-1958299 REVERSE LENGTH=1769
Length=1769
Score = 2475 bits (1340), Expect = 0.0
Identities = 1444/1495 (97%), Gaps = 4/1495 (0%)
Strand=Plus/Plus
Query 1 AGGTGTGAAGGAAGAAGACGATGGCGTCAATGTCTCTCTCCTTTTCTTCTTCGCTATGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 AGGTGTGAAGGAAGAAGACGATGGCGTCAATGTCTCTCTCCTTTTCTTCTTCGCTATGTT 99
Query 61 CGTCTC-GAATTCCCGAAGGAAAGCGTAGGTTTCTTCACAGAGATGTGAGCTTCG-TACG 118
| || | |||| |||||||| ||||||||||||| ||||||||||||| || ||| || |
Sbjct 100 CATC-CAGAATCCCCGAAGGTAAGCGTAGGTTTCGTCACAGAGATGTGGGCATCGTTA-G 157
Query 119 ATGCGTTTTGGCTGCTTCTAAATCTTCTCCGGGAAGTGTTACGAAGAAGAGGCTTTGGAA 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ATGCGTTTTGGCTGCTTCGAAATCTTCTCCGGGAAGTGTTACGAAGAAGAGGCTTTGGAA 217
Query 179 AGACGGCGAATTTCCCGGAATCACGGAACCTGTTAATCCGAGAAGAACTCCGATTAAGAA 238
|||||||||||| |||||||||||||| || ||||||| ||||||||||||||| |||||
Sbjct 218 AGACGGCGAATTCCCCGGAATCACGGAGCCGGTTAATCAGAGAAGAACTCCGATAAAGAA 277
Query 239 TGTGAAGAAGAAACTTGACAGGAGAAGCAAAGCTAACGGATGGGCTAACACCGTCACTGA 298
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 278 TGTGAAGAAGAAACTTGACAGGAGAAGCAAAGCTAACGGATGGGTTAACACCGTCACTGA 337
Query 299 AACTTTGGCCGATCTCATCGCCAAAAAGCAGTGGTTACAAGCTCTTGAGGTTTTTGATAT 358
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 AACTTTGTCCGATCTCATCGCCAAAAAGCAGTGGTTACAAGCTCTCGAGGTTTTTGATAT 397
Query 359 GTTGAGGGAACAAACGTTTTATCAACCAAAGGAAGGAACTTACATGAAGCTGCTTGTTCT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GTTGAGGGAACAAACATTTTATCAACCAAAGGAAGGAACTTACATGAAGCTGCTTGTTCT 457
Query 419 TCTGGGTAAATCTGGTCAACCCAATCGTGCACAGAAGCTGTTCGACGAAATGCTTGAAGA 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TCTCGGTAAATCTGGTCAACCCAATCGTGCACAGAAGCTGTTCGACGAAATGCTTGAAGA 517
Query 479 AGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTACACTCGCAGCAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTACACTCGCAGCAA 577
Query 539 TCTCATCGACGATGCTTTTTCAATTCTTGATACAATGAAAAGCTTGCCTCAATGCCAACC 598
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 578 TCTCATCGACGATGCTTTTTCAATTCTTGATAAAATGAAAAGCTTTCCTCAATGCCAACC 637
Query 599 TGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCTTCTCAGTTTGACTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCTTCTCAGTTTGACTT 697
Query 659 GGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAACACTGTGACCCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAACACTGTGACCCA 757
Query 719 GAACATAGTTTTAAGTGGGTACGGTAGGGTCGGAAGGTTTGATCAAATGGAGAAAGTGTT 778
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 758 GAACATAGTTTTAAGTGGGTACGGTAGGGTCGGAAGGTTTGATCAGATGGAGAAAGTTTT 817
Query 779 GTCTGATATGCTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATGAATATCATCCT 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GTCTGATATGTTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATGAATATCATCCT 877
Query 839 TAGTGTGTTTGGGAACATGGGTAAGATAGACATGATGGAGAGCTGGTACGAAAAGTTCAG 898
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TAGTGTGTTTGGAAACATGGGTAAGATAGACATGATGGAGAGCTGGTACGAAAAGTTCAG 937
Query 899 GAACTTCGGGATTGAGCCAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAA 958
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GAACTTTGGGATTGAGCCAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAA 997
Query 959 GAAGAGAATGTATGATAAGATGTCGTCTGTCATGGAATACATGCGAAAGCTTGAGTTTCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 998 GAAGAGAATGTATGATAAGATGTCGTCTGTCATGGAATACATGCGAAAGCTAGAGTTTCC 1057
Query 1019 ATGGACAACATCGACCTACAACAATATCATCGAGGCGTTTGCAGATGTTGGTGATGCGAA 1078
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1058 GTGGACAACATCAACCTACAACAATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAA 1117
Query 1079 GAACATGGAGTTGACATTTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGAC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GAACATGGAGTTGACATTTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGAC 1177
Query 1139 CTTTTGCTGTCTCATAAATGGATATGCCAATGCCGGTCTTTTCCACAAGGTCATAAGTAG 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1178 CTTTTGCTGTCTCATAAACGGATATGCCAATGCCGGTCTTTTCCACAAGGTGATAAGTAG 1237
Query 1199 TGTCCAGTTGGCTGCTAAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCAGTTAT 1258
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1238 TGTTCAGTTGGCTGCTAAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCGGTGAT 1297
Query 1259 AGCAGCGTGCGCTAAAGCCGATGATCTGATAGAGATGGAAAGAGTGTACACAAGAATGAA 1318
| ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1298 ATCAGCGTGTGCTAAAGCAGATGATCTGATAGAGATGGAAAGAGTGTACATAAGAATGAA 1357
Query 1319 GGAGAGACAGTGCGTATGTGATTCAAGAACGTTTGAGATCATGGTCGAGGCATATGAAAA 1378
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1358 GGAGAGACAATGCGTATGCGATTCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAA 1417
Query 1379 GGAAGGTATGAATGATAAGATATATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCG 1438
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AGAAGGTATGAATGATAAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCG 1477
Query 1439 CGCTGTAGCTACAAAAGAGATGGAGAATCTTCCAGCAGGATGATTGCCGTTTGTG 1493
| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1478 CACTGTTGCTACAAAAGAGATGGAGAATCTTCCGGCAGGATGATTGCGGTTTGTG 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5