BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928292
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kin... 1925 0.0
> AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase
| chr3:1990416-1992744 REVERSE LENGTH=1575
Length=1575
Score = 1925 bits (1042), Expect = 0.0
Identities = 1104/1135 (97%), Gaps = 0/1135 (0%)
Strand=Plus/Plus
Query 14 TCTCTTAGACGCTTATGGCAGTGAAGAAAGCCTGCGAAATGTTCCCGAAGAGTTTGATCG 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TCTCTTAGACGCTTATGGCAGTGAAGAAAGCCTGCGAAATGTTCCCGAAGAGTTTGATCG 209
Query 74 AAGATGTTCACAAATGGGGTTGCATGAAGCAAACAGGTGTTAGCCTTAGATACATGATGG 133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 210 AAGATGTTCACAAATGGGGTTGCATGAAGCAAACCGGTGTTAGCCTTAGATACATGATGG 269
Query 134 AGTTTGGTTCCAAACCTACTGAGAGGAATCTTTTGATTTCTGCTCAGTTTCTGCATAAGG 193
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 270 AGTTTGGTTCCAAACCTACTGAGAGGAATCTTTTGATTTCTGCTCAGTTTTTGCATAAGG 329
Query 194 AGCTTCCGATTCGCGTCGCCAGGAGAGCGATCGAACTCCAGACGCTTCCTTATGGTCTCT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AGCTTCCGATTCGCGTCGCCAGGAGAGCGATCGAACTCCAGACGCTTCCTTATGGTCTCT 389
Query 254 CTGAGAAACCTGCCGTTTTGAAGGTGCGAGATTGGTATTTGGAATCTTTCAGGGACATGA 313
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 390 CTGATAAACCTGCCGTTTTGAAGGTGCGGGATTGGTATTTGGAATCTTTCAGGGACATGA 449
Query 314 GAGCATTTCCTGAGATTAAGGATTCCGGTGACGAGAAAGAATTCACTCAGATGATTAAGG 373
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 450 GAGCATTTCCTGAGATTAAGGATTCGGGTGACGAGAAAGATTTCACTCAGATGATTAAGG 509
Query 374 CTGTTAAAGTAAGGCACAACAATGTGGTTCCCATGATGGCTTTAGGTGTTAATCAGCTCA 433
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 510 CTGTCAAAGTAAGGCATAACAATGTGGTTCCCATGATGGCTTTGGGTGTTAATCAGCTCA 569
Query 434 AGAAAGGAATGAATTCCGGAAATCTTGATGAGATTCATCAGTTTCTTGATCGCTTCTACT 493
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 570 AGAAAGGAATGAATTCTGGAAATCTTGATGAGATTCATCAGTTTCTTGATCGTTTCTACT 629
Query 494 TGTCGCGAATTGGGATCCGTATGCTTATTGGGCAGCATGTTGAGTTGCATAATCCAAATC 553
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 630 TGTCGCGAATCGGGATCCGGATGCTTATTGGGCAGCACGTTGAGTTGCATAATCCAAATC 689
Query 554 CACCACTTCATACAGTGGGTTACATACACACAAAGATGTCTCCTATGGAGGTAGCAAGGA 613
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 690 CACCGCTTCATACAGTGGGTTATATACACACAAAGATGTCTCCTATGGAGGTAGCAAGGA 749
Query 614 ACGCCAGTGAAGATGCTCGCTCAATTTGTTTCCGAGAGTATGGTTCTGCACCGGAAATAA 673
| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 750 ATGCAAGTGAAGATGCTCGGTCAATTTGTTTCCGAGAGTACGGTTCTGCACCGGAAATAA 809
Query 674 ACATATATGGCGATCCCAGTTTCACCTTTCCGTATGTTCCAACGCATTTGCATCTTATGA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ACATATATGGCGATCCCAGTTTCACCTTTCCGTATGTTCCAACGCATTTGCATCTTATGA 869
Query 734 TGTATGAGCTAGTCAAGAACTCTCTACGTGCTGTCCAAGAGCGATTTGTTGACTCTGATA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TGTATGAGCTAGTCAAGAACTCTCTACGTGCTGTCCAAGAGCGATTTGTTGACTCTGATA 929
Query 794 GAGTTGCACCACCAATCCGCATTATAGTTGCTGATGGAATTGAAGATGTTACAATAAAGG 853
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 930 GAGTTGCACCACCAATCCGCATTATAGTTGCTGATGGAATCGAAGATGTTACTATAAAGG 989
Query 854 TCTCAGATGAAGGTGGAGGTATAGCGAGAAGCGGTCTTCCCAAAATATTCACCTATCTTT 913
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 990 TCTCAGATGAAGGTGGAGGTATAGCAAGAAGCGGTCTTCCCAGAATATTCACCTATCTTT 1049
Query 914 ACAGCACTGCAAGAAACCCGCTTGAGGAGGAAGTCGATTTAGGAACAGCTGATGTTCCGG 973
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 1050 ACAGCACTGCAAGAAACCCGCTTGAGGAGGATGTCGATTTAGGAATAGCTGATGTTCCCG 1109
Query 974 TGACTATGGCTGGGTATGGTTACGGTCTTCCAATTAGTCGCTTGTATGCTCGATATTTCG 1033
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGACTATGGCTGGATATGGTTATGGTCTTCCAATTAGTCGCTTGTATGCTCGATATTTCG 1169
Query 1034 GTGGAGATTTGCAGATCATATCCATGGAAGGATATGGGACTGATGCTTACTTGCACTTGT 1093
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1170 GTGGAGATTTGCAGATCATATCCATGGAAGGATATGGGACTGATGCATACTTGCACTTGT 1229
Query 1094 CTCGCCTTGGAGATTCGCAAGAGCCTTTACCCTGAGAACATCTCCATGTCAGGCA 1148
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1230 CTCGCCTTGGAGATTCGCAAGAGCCTTTACCCTGAGAACATCTCTATGTCAGGCA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5